private Dictionary<string, HashSet<int>> _sopInstanceUidAndFrameNumber; // if specified, annotation is created for these SOP Instances with the specified frame numbers only. The images must belong to the same series.
#endregion Fields
#region Constructors
public AimAnnotationCreationContext(AnnotationKind annotationKind, TemplateTree.StandardCodeSequence annotationTypeCode, TemplateTree.AimTemplateTree templateTree, int seriesNumber)
{
Platform.CheckForNullReference(annotationTypeCode, "annotationTypeCode");
Platform.CheckForNullReference(templateTree, "templateTree");
_annotationKind = annotationKind;
_annotationTypeCode = annotationTypeCode;
_templateTree = templateTree;
_seriesNumber = seriesNumber;
_includeCalculations = true;
}
private Dictionary <string, HashSet <int> > _sopInstanceUidAndFrameNumber; // if specified, annotation is created for these SOP Instances with the specified frame numbers only. The images must belong to the same series.
public AimAnnotationCreationContext(AnnotationKind annotationKind, TemplateTree.StandardCodeSequence annotationTypeCode, TemplateTree.AimTemplateTree templateTree, int seriesNumber)
{
Platform.CheckForNullReference(annotationTypeCode, "annotationTypeCode");
Platform.CheckForNullReference(templateTree, "templateTree");
_annotationKind = annotationKind;
_annotationTypeCode = annotationTypeCode;
_templateTree = templateTree;
_seriesNumber = seriesNumber;
_includeCalculations = true;
}
public static AimTemplateTree AimAnnotationToAimTemplateTree(Aim4AnnotationInstance annotationInstance, AimTemplateTree template)
{
if (annotationInstance == null || annotationInstance.AimAnnotationEntity == null)
return null;
var annotation = annotationInstance.AimAnnotationEntity;
if (annotation.ImagingPhysicalEntityCollection != null)
{
foreach (var imgPhysEnt in annotation.ImagingPhysicalEntityCollection)
{
if (IsNullCodeList(imgPhysEnt.TypeCode))
continue;
AimTemplateTreeAnatomicEntityNode matchingTreeNode = FromImagingPhysicalEntity(imgPhysEnt, template);
if (matchingTreeNode == null)
return null;
}
}
if (annotation.ImagingObservationEntityCollection != null)
{
foreach (var io in annotation.ImagingObservationEntityCollection)
{
if (IsNullCodeList(io.TypeCode))
continue;
AimTemplateTreeImagingObservationNode matchingTreeNode = FromImagingObservationEntity(io, template);
if (matchingTreeNode == null)
return null;
}
}
if (annotation.CalculationEntityCollection != null)
{
//foreach (var calc in annotation.CalculationCollection)
//{
// AimTemplateTreeCalculationNode matchingTreeNode =
// template.TemplateNodes.OfType<AimTemplateTreeCalculationNode>().FirstOrDefault(
// treeCalc => treeCalc.Label == calc.Description);
// if (matchingTreeNode != null)
// {
// AimTemplateTreeCalculationType matchingCalculationType =
// matchingTreeNode.CalculationTypes.FirstOrDefault(
// treeCalc => ToStandardCodeSequence(treeCalc).CodeValue == calc.CodeValue);
// if (matchingCalculationType != null)
// {
// matchingTreeNode.SelectedCalculationType = matchingCalculationType;
// }
// else
// return null;
// //if (matchingTreeNode.HasConfidence && calc..HasValue)
// // matchingTreeNode.ConfidenceValue = calc.AnnotatorConfidence.Value;
// }
// else
// return null;
//}
}
if (annotation.InferenceEntityCollection != null)
{
foreach (var inference in annotation.InferenceEntityCollection)
{
if (IsNullCodeList(inference.TypeCode))
continue;
foreach (var inferenceNode in template.TemplateNodes.OfType<AimTemplateTreeInferenceNode>())
{
AimTemplateTreeAllowedTerm matchingAllowedTerm =
inferenceNode.AllowedTerms.FirstOrDefault(term => DoTheyMatch(term, inference.TypeCode));
if (matchingAllowedTerm != null)
matchingAllowedTerm.Selected = true;
}
}
}
template.Markup.Clear();
if (annotation is aim4_dotnet.ImageAnnotation)
{
var imageAnnotation = (aim4_dotnet.ImageAnnotation)annotation;
var annotationName = string.IsNullOrEmpty(imageAnnotation.Name) ? "" : imageAnnotation.Name;
if (imageAnnotation.MarkupEntityCollection != null)
{
foreach (var markupEntity in imageAnnotation.MarkupEntityCollection)
{
if (markupEntity is aim4_dotnet.GeometricShapeEntity)
{
var markup = ToMarkup2D((aim4_dotnet.GeometricShapeEntity)markupEntity, annotationName);
if (markup != null)
template.Markup.Add(markup);
}
else if (markupEntity is aim4_dotnet.TextAnnotationEntity)
{
var textAnnotationEntity = (aim4_dotnet.TextAnnotationEntity) markupEntity;
if (textAnnotationEntity.GeometricShapeEntity != null)
{
var calloutText = AimHelpers.FormatPointCalloutText(annotationName, textAnnotationEntity.Text);
aim4_dotnet.TwoDimensionGeometricShapeEntity geoShapeEntity = null;
if (textAnnotationEntity.GeometricShapeEntity is aim4_dotnet.TwoDimensionGeometricShapeEntity)
{
var twoDGeoShape = (aim4_dotnet.TwoDimensionGeometricShapeEntity) textAnnotationEntity.GeometricShapeEntity;
switch (twoDGeoShape.TwoDimensionSpatialCoordinateCollection.Count)
{
case 1:
{
var markup = new MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = twoDGeoShape.IncludeFlag;
markup.Point = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = new PointF(markup.Point.X, markup.Point.Y);
SetMarkupImageReference(markup, twoDGeoShape);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
case 2:
{
var markup = new MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = twoDGeoShape.IncludeFlag;
markup.Point = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[1]);
SetMarkupImageReference(markup, twoDGeoShape);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
default:
Platform.Log(LogLevel.Error, "TextAnnotation has [{0}] Connector Points", twoDGeoShape.TwoDimensionSpatialCoordinateCollection.Count);
break;
}
}
else if (textAnnotationEntity.GeometricShapeEntity is aim4_dotnet.ThreeDimensionGeometricShapeEntity)
{
// TODO: implement 2D markup conversion!
// TODO: convert to the 2D ImageReferenceUid and referencedFrameNumber!
var threeDGeoShape = (aim4_dotnet.ThreeDimensionGeometricShapeEntity) textAnnotationEntity.GeometricShapeEntity;
switch (threeDGeoShape.ThreeDimensionSpatialCoordinateCollection.Count)
{
case 1:
throw new NotImplementedException();
break;
case 2:
throw new NotImplementedException();
break;
default:
Platform.Log(LogLevel.Error, "TextAnnotation has [{0}] 3D Connector Points", threeDGeoShape.ThreeDimensionSpatialCoordinateCollection.Count);
break;
}
}
}
}
else
Debug.Assert(false, "Unexpected markup type");
}
}
}
return template;
}
private static AimTemplateTreeAnatomicEntityNode FromImagingPhysicalEntity(aim4_dotnet.ImagingPhysicalEntity imagingPhysicalEntity, AimTemplateTree template)
{
AimTemplateTreeAnatomicEntityNode matchingTreeNode = null;
if (imagingPhysicalEntity.QuestionTypeCode != null)
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => DoTheyMatch(treeAe.QuestionType, imagingPhysicalEntity.QuestionTypeCode));
else if (!String.IsNullOrEmpty(imagingPhysicalEntity.Label))
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => String.Equals(imagingPhysicalEntity.Label, treeAe.Label));
else
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => treeAe.ItemNumber == imagingPhysicalEntity.QuestionIndex);
if (matchingTreeNode != null)
{
AimTemplateTreeAllowedTerm matchingAllowedTerm = matchingTreeNode.AllowedTerms.FirstOrDefault(treeAe => DoTheyMatch(treeAe, imagingPhysicalEntity.TypeCode));
if (matchingAllowedTerm != null)
matchingAllowedTerm.Selected = true;
else
return null;
if (matchingTreeNode.HasConfidence && imagingPhysicalEntity.AnnotatorConfidence.HasValue)
matchingTreeNode.ConfidenceValue = imagingPhysicalEntity.AnnotatorConfidence.Value;
}
else
return null;
if (imagingPhysicalEntity.ImagingPhysicalEntityCharacteristicCollection != null)
{
foreach (var aec in imagingPhysicalEntity.ImagingPhysicalEntityCharacteristicCollection)
{
if (IsNullCodeList(aec.TypeCode))
continue;
AimTemplateTreeAnatomicEntityCharacteristicNode matchingAecTreeNode =
FromImagingPhysicalEntityCharacteristic(aec, matchingTreeNode.AnatomicEntityCharacteristicTreeNodes);
if (matchingAecTreeNode == null)
return null;
}
}
if (imagingPhysicalEntity.ImagingObservationCharacteristicCollection != null)
{
foreach (var ioc in imagingPhysicalEntity.ImagingObservationCharacteristicCollection)
{
if (IsNullCodeList(ioc.TypeCode))
continue;
AimTemplateTreeImagingObservationCharacteristicNode matchingIocTreeNode =
FromImagingObservationCharacteristic(ioc, matchingTreeNode.ImagingObservationCharacteristicTreeNodes);
if (matchingIocTreeNode == null)
return null;
}
}
return matchingTreeNode;
}
