public PanelForPlatesSelection(bool IsCheckBoxes, cListPlates InitialList, bool SelectOnlyActive)
{
if (InitialList == null)
InitialList = cGlobalInfo.CurrentScreening.ListPlatesAvailable;
int NumPlates = InitialList.Count;
this.AutoScroll = true;
this.MouseDown += new System.Windows.Forms.MouseEventHandler(this.PanelForClassSelection_MouseDown);
if (IsCheckBoxes)
ListCheckBoxes = new List<System.Windows.Forms.CheckBox>();
else
ListRadioButtons = new List<System.Windows.Forms.RadioButton>();
for (int IdxPlate = 0; IdxPlate < NumPlates; IdxPlate++)
{
if (IsCheckBoxes)
{
System.Windows.Forms.CheckBox CurrentCheckBox = new System.Windows.Forms.CheckBox();
CurrentCheckBox.Text = InitialList[IdxPlate].GetName();
CurrentCheckBox.Width = 300;
CurrentCheckBox.Tag = InitialList[IdxPlate];
CurrentCheckBox.Location = new System.Drawing.Point(5, CurrentCheckBox.Height * IdxPlate);
if (SelectOnlyActive)
{
cPlate TmpPlate = cGlobalInfo.CurrentScreening.ListPlatesActive.FindPlate(InitialList[IdxPlate]);
if(TmpPlate==null)
CurrentCheckBox.Checked = false;
else
CurrentCheckBox.Checked = true;
}
else
CurrentCheckBox.Checked = true;
System.Windows.Forms.ToolTip ToolTipForPlate = new System.Windows.Forms.ToolTip();
ToolTipForPlate.SetToolTip(CurrentCheckBox, InitialList[IdxPlate].GetShortInfo());
CurrentCheckBox.MouseDown += new System.Windows.Forms.MouseEventHandler(this.PanelForClassSelection_MouseDown);
ListCheckBoxes.Add(CurrentCheckBox);
}
else
{
System.Windows.Forms.RadioButton CurrentRadioButton = new System.Windows.Forms.RadioButton();
CurrentRadioButton.Text = InitialList[IdxPlate].GetName();
CurrentRadioButton.Location = new System.Drawing.Point(5, CurrentRadioButton.Height * IdxPlate);
CurrentRadioButton.Checked = false;
System.Windows.Forms.ToolTip ToolTipForPlate = new System.Windows.Forms.ToolTip();
ToolTipForPlate.SetToolTip(CurrentRadioButton, InitialList[IdxPlate].GetShortInfo());
CurrentRadioButton.MouseDown += new System.Windows.Forms.MouseEventHandler(this.PanelForClassSelection_MouseDown);
ListRadioButtons.Add(CurrentRadioButton);
}
}
if (IsCheckBoxes)
this.Controls.AddRange(ListCheckBoxes.ToArray());
else
this.Controls.AddRange(ListRadioButtons.ToArray());
}
public cFeedBackMessage Run()
{
FormForDisplay WindowToDisplay = new FormForDisplay();
WindowToDisplay.Text = "Plates Selection";
WindowToDisplay.FormBorderStyle = FormBorderStyle.Sizable;
PanelForPlatesSelection PlateSelectionPanel = new PanelForPlatesSelection(this.IsCheckBoxes, ListInitialPlates, IsCheckOnlyActive);
PlateSelectionPanel.Height = WindowToDisplay.Height - 70;
PlateSelectionPanel.Width = WindowToDisplay.Width - 30;
// PlateSelectionPanel.SelectAll();
//ClassSelectionPanel.Select(0);
//ClassSelectionPanel.Select(1);
PlateSelectionPanel.Location = new System.Drawing.Point(5, 5);
//PlateSelectionPanel.Width = 300;
//PlateSelectionPanel.Height = PlateSelectionPanel.ListCheckBoxes.Count * 25;
PlateSelectionPanel.BorderStyle = BorderStyle.Fixed3D;
PlateSelectionPanel.Anchor =(System.Windows.Forms.AnchorStyles)(System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom
| System.Windows.Forms.AnchorStyles.Left | System.Windows.Forms.AnchorStyles.Right);
// MyPanel.Controls.Add(ClassSelectionPanel);
Button ReturnButton = new Button();
ReturnButton.Text = "Ok";
ReturnButton.Anchor = (System.Windows.Forms.AnchorStyles)(System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left);
ReturnButton.DialogResult = DialogResult.OK;
ReturnButton.Location = new System.Drawing.Point(PlateSelectionPanel.Location.X, PlateSelectionPanel.Location.Y + PlateSelectionPanel.Height );
WindowToDisplay.Controls.Add(ReturnButton);
WindowToDisplay.Controls.Add(PlateSelectionPanel);
WindowToDisplay.Width = PlateSelectionPanel.Width + 28;
WindowToDisplay.Height = PlateSelectionPanel.Height + ReturnButton.Height + 48;
if (WindowToDisplay.ShowDialog() != System.Windows.Forms.DialogResult.OK)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "Selection aborded !";
return FeedBackMessage;
}
this.ListSelectedPlates = PlateSelectionPanel.GetListSelectedPlates();
if (this.ListSelectedPlates.Count == 0)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No class selected !";
return FeedBackMessage;
}
return FeedBackMessage;
}
public cListPlates GetListSelectedPlates()
{
cListPlates LP = new cListPlates();
foreach (var item in this.ListCheckBoxes)
{
if (item.Checked)
LP.Add((cPlate)item.Tag);
}
return LP;
}
//private void pCAToolStripMenuItem2_Click(object sender, EventArgs e)
//{
// ComputeAndDisplayPCA(CompleteScreening.ListPlatesActive);
//}
//private void ComputeAndDisplayPCA(cListPlates PlatesToProcess)
//{
// if (CompleteScreening == null) return;
// FormClassification WindowClassification = new FormClassification(CompleteScreening);
// WindowClassification.label1.Text = "Class of interest";
// WindowClassification.Text = "PCA";
// WindowClassification.buttonClassification.Text = "Process";
// if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
// int NeutralClass = WindowClassification.comboBoxForNeutralClass.SelectedIndex;
// int NumWell = 0;
// int NumWellForLearning = 0;
// foreach (cPlate CurrentPlate in PlatesToProcess)
// {
// foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
// {
// if (CurrentWell.GetClassIdx() == NeutralClass)
// NumWellForLearning++;
// }
// NumWell += CurrentPlate.GetNumberOfActiveWells();
// }
// if (NumWellForLearning == 0)
// {
// MessageBox.Show("No well of the selected class identified", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
// }
// int NumDesc = CompleteScreening.GetNumberOfActiveDescriptor();
// if (NumDesc <= 1)
// {
// MessageBox.Show("More than one descriptor are required for this operation", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
// }
// double[,] DataForPCA = new double[NumWellForLearning, CompleteScreening.GetNumberOfActiveDescriptor() + 1];
// // return;
// Matrix EigenVectors = PCAComputation(DataForPCA, NumWellForLearning, NumDesc, NeutralClass, PlatesToProcess);
// if (EigenVectors == null) return;
// SimpleForm NewWindow = new SimpleForm(CompleteScreening);
// Series CurrentSeries = new Series();
// CurrentSeries.ShadowOffset = 1;
// Matrix CurrentPt = new Matrix(NumWell, NumDesc);
// DataForPCA = new double[NumWell, NumDesc + 1];
// for (int desc = 0; desc < NumDesc; desc++)
// {
// if (CompleteScreening.ListDescriptors[desc].IsActive() == false) continue;
// List<double> CurrentDesc = new List<double>();
// foreach (cPlate CurrentPlate in PlatesToProcess)
// {
// for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
// for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
// {
// cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
// if (TmpWell == null) continue;
// CurrentDesc.Add(TmpWell.ListDescriptors[desc].GetValue());
// }
// }
// for (int i = 0; i < NumWell; i++)
// DataForPCA[i, desc] = CurrentDesc[i];
// }
// int IDx = 0;
// foreach (cPlate CurrentPlate in PlatesToProcess)
// {
// for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
// for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
// {
// cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
// if (TmpWell == null) continue;
// DataForPCA[IDx++, NumDesc] = TmpWell.GetClassIdx();
// }
// }
// for (int i = 0; i < NumWell; i++)
// for (int j = 0; j < NumDesc; j++) CurrentPt.addElement(i, j, DataForPCA[i, j]);
// Matrix NewPt = new Matrix(NumWell, NumDesc);
// NewPt = CurrentPt.multiply(EigenVectors);
// double MinY = double.MaxValue, MaxY = double.MinValue;
// for (int IdxValue0 = 0; IdxValue0 < NumWell; IdxValue0++)
// {
// double CurrentY = NewPt.getElement(IdxValue0, 1);
// if (CurrentY < MinY) MinY = CurrentY;
// if (CurrentY > MaxY) MaxY = CurrentY;
// CurrentSeries.Points.AddXY(NewPt.getElement(IdxValue0, 0), CurrentY);
// CurrentSeries.Points[IdxValue0].Color = CompleteScreening.GlobalInfo.ListWellClasses[(int)DataForPCA[IdxValue0, NumDesc]].ColourForDisplay;
// CurrentSeries.Points[IdxValue0].MarkerStyle = MarkerStyle.Circle;
// CurrentSeries.Points[IdxValue0].MarkerSize = 8;
// }
// ChartArea CurrentChartArea = new ChartArea();
// CurrentChartArea.BorderColor = Color.Black;
// NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
// NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
// CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
// string AxeName = "";
// int IDxDesc = 0;
// for (int Desc = 0; Desc < CompleteScreening.ListDescriptors.Count; Desc++)
// {
// if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
// AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 0)) + "x" + CompleteScreening.ListDescriptors[Desc].GetName() + " + ";
// // AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
// }
// CurrentChartArea.Axes[0].Title = AxeName.Remove(AxeName.Length - 3);
// CurrentChartArea.Axes[0].MajorGrid.Enabled = true;
// AxeName = "";
// IDxDesc = 0;
// for (int Desc = 0; Desc < CompleteScreening.ListDescriptors.Count; Desc++)
// {
// if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
// AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 1)) + "x" + CompleteScreening.ListDescriptors[Desc].GetName() + " + ";
// }
// //AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
// CurrentChartArea.Axes[1].Title = AxeName.Remove(AxeName.Length - 3);
// CurrentChartArea.Axes[1].MajorGrid.Enabled = true;
// CurrentChartArea.Axes[1].Minimum = MinY;
// CurrentChartArea.Axes[1].Maximum = MaxY;
// CurrentChartArea.AxisX.LabelStyle.Format = "N2";
// CurrentChartArea.AxisY.LabelStyle.Format = "N2";
// CurrentSeries.ChartType = SeriesChartType.Point;
// if (GlobalInfo.OptionsWindow.checkBoxDisplayFastPerformance.Checked) CurrentSeries.ChartType = SeriesChartType.FastPoint;
// NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
// NewWindow.Text = "PCA";
// NewWindow.Show();
// NewWindow.chartForSimpleForm.Update();
// NewWindow.chartForSimpleForm.Show();
// NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
//}
private Matrix PCAComputation(double[,] DataForPCA, int NumWellForLearning, int NumDesc, int NeutralClass, cListPlates PlatesToProcess)
{
for (int desc = 0; desc < NumDesc; desc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[desc].IsActive() == false) continue;
List<double> CurrentDesc = new List<double>();
foreach (cPlate CurrentPlate in PlatesToProcess)
{
for (int IdxValue = 0; IdxValue < cGlobalInfo.CurrentScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < cGlobalInfo.CurrentScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if ((TmpWell == null) || (TmpWell.GetCurrentClassIdx() != NeutralClass)) continue;
CurrentDesc.Add(TmpWell.ListSignatures[desc].GetValue());
}
}
for (int i = 0; i < NumWellForLearning; i++)
{
DataForPCA[i, desc] = CurrentDesc[i];
}
}
int IDx = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
{
if (CurrentWell.GetCurrentClassIdx() == NeutralClass)
DataForPCA[IDx++, NumDesc] = NeutralClass;// CurrentWell.GetClassIdx();
}
// NumWell += CompleteScreening.GetCurrentDisplayPlate().GetNumberOfActiveWells();
}
double[,] Basis;
double[] s2;
int Info;
alglib.pcabuildbasis(DataForPCA, NumWellForLearning, NumDesc, out Info, out s2, out Basis);
Matrix EigenVectors = null;
if (Info > 0)
{
EigenVectors = new Matrix(NumDesc, NumDesc);
for (int row = 0; row < NumDesc; row++)
for (int col = 0; col < NumDesc; col++)
EigenVectors.addElement(row, col, Basis[row, col]);
}
return EigenVectors;
}
private void GenerateRandomProjectionDescriptorItem(object sender, EventArgs e)
{
FormForProjections WindowClassification = new FormForProjections();
//WindowClassification.buttonClassification.Text = "Process";
WindowClassification.label1.Text = "Class of Interest";
WindowClassification.Text = "Random Projection";
WindowClassification.IsPCA = true;
WindowClassification.numericUpDownNumberOfAxis.Maximum = cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor();
cListPlates PlatesToProcess = new cListPlates();
if (WindowClassification.radioButtonFromCurrentPlate.Checked)
PlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
PlatesToProcess = cGlobalInfo.CurrentScreening.ListPlatesActive;
WindowClassification.PlatesToProcess = PlatesToProcess;
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
}
public string GeneratePCADescriptor(cListPlates PlatesToProcess, int NumberOfAxis, int NeutralClass)
{
int NumWell = 0;
int NumWellForLearning = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
NumWellForLearning += CurrentPlate.GetNumberOfWellOfClass(NeutralClass);
NumWell += cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetNumberOfActiveWells();
}
if (NumWellForLearning == 0)
{
MessageBox.Show("No well identified !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return null;
}
int NumDesc = cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor();
if (NumDesc <= 1)
{
MessageBox.Show("More than one descriptor are required for this operation", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return null;
}
double[,] DataForLDA = new double[NumWellForLearning, cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor() + 1];
// return;
Matrix EigenVectors = PCAComputation(DataForLDA, NumWellForLearning, NumDesc, NeutralClass, PlatesToProcess);
string AxeName = "";
int IDxDesc = 0;
//for (int Desc = 0; Desc < CompleteScreening.ListDescriptors.Count; Desc++)
//{
// if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
// AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
//}
int OriginalDescNumber = cGlobalInfo.WindowHCSAnalyzer.checkedListBoxActiveDescriptors.Items.Count;
for (int AxesIdx = 0; AxesIdx < NumberOfAxis; AxesIdx++)
{
//for (int Idx = 0; Idx < CompleteScreening.GlobalInfo.WindowHCSAnalyzer.checkedListBoxActiveDescriptors.Items.Count; Idx++)
//{
// if (CompleteScreening.ListDescriptors[Idx].IsActive())
// if (CompleteScreening.ListDescriptors[Idx].GetBinNumber() == 1)
// {
// AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, AxesIdx)) + "x" + CompleteScreening.ListDescriptors[Idx].GetName() + " + ";
// }
// else
// {
// MessageBox.Show("Descriptor length not consistent (" + CompleteScreening.ListDescriptors[Idx].GetName() + " : " + CompleteScreening.ListDescriptors[Idx].GetBinNumber() + " bins", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return "";
// }
//}
//cDescriptorsType ColumnType = new cDescriptorsType(AxeName.Remove(AxeName.Length - 3), true, 1);
cDescriptorType ColumnType = new cDescriptorType("PCA_" + (AxesIdx + 1), true, 1);
while (cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(ColumnType) == false)
{
FormForNewDescName NewNameWindow = new FormForNewDescName();
NewNameWindow.textBoxName.Text = ColumnType.GetName();
if (NewNameWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK)
return ColumnType.GetName();
ColumnType.ChangeName(NewNameWindow.textBoxName.Text);
}
//CompleteScreening.ListDescriptors.AddNew(ColumnType);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in TmpPlate.ListActiveWells)
{
cListSignature LDesc = new cListSignature();
double NewValue = 0;
IDxDesc = 0;
// AxeName += "\nPCA_" + (AxesIdx + 1);
for (int Idx = 0; Idx < OriginalDescNumber - 1; Idx++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[Idx].IsActive())
// AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc, AxesIdx)) + "x" + CompleteScreening.ListDescriptors[Idx].GetName() + " + ";
NewValue += EigenVectors.getElement(IDxDesc++, AxesIdx) * Tmpwell.ListSignatures[Idx].GetValue();
}
cSignature NewDesc = new cSignature(NewValue, ColumnType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
}
}
}
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
StartingUpDateUI();
return AxeName;
}
private void copyPropertyToolStripMenuItem_Click(object sender, EventArgs e)
{
if (cGlobalInfo.CurrentScreening == null) return;
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
GUI_ListWellProperty.IsCheckBoxes = false;
if (GUI_ListWellProperty.Run().IsSucceed == false) return;
List<cPropertyType> ListSelectedProp = GUI_ListWellProperty.GetOutPut();
cListPlates LP = new cListPlates();
if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates();
GUI_ListPlates.IsCheckBoxes = true;
cFeedBackMessage FBM = GUI_ListPlates.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FBM.Message);
if (!FBM.IsSucceed) return;
LP = GUI_ListPlates.GetOutPut();
}
else if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
}
else
{
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
}
cGlobalInfo.CurrentScreening.CopyPropertyToClipBoard(ListSelectedProp, LP);
}
public cFeedBackMessage Run(cScreening CompleteScreening)
{
if (this.Input == null)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No input data defined.";
return FeedBackMessage;
}
bool IsCurrentDescOnly = false;
if (this.ListPlates == null)
ListPlates = CompleteScreening.ListPlatesActive;
cDisplayToWindow CDW1 = new cDisplayToWindow();
cDesignerTab DT = new cDesignerTab();
foreach (cDescriptorType CurrentDesc in CompleteScreening.ListDescriptors.GetActiveDescriptors())
{
cListExtendedTable CompleteListOfData = new cListExtendedTable();
cExtendedTable FullTableAverage = new cExtendedTable();
FullTableAverage.ListRowNames = new List<string>();
string TableName = CurrentDesc.GetName() + " evolution\n" + Input[0].Sum() + " classes - ";
for (int i = 0; i < Input[0].Count; i++)
{
if ((Input[0][i] == 1) && (Input[0].ListTags != null) && (Input[0].ListTags[i].GetType() == typeof(cWellClassType)))
{
cWellClassType TmpWellClass = (cWellClassType)Input[0].ListTags[i];
CompleteListOfData.Add(new cExtendedTable());
CompleteListOfData[CompleteListOfData.Count - 1].Name = TmpWellClass.Name;
CompleteListOfData[CompleteListOfData.Count - 1].Tag = Input[0].ListTags[i];
FullTableAverage.Add(new cExtendedList(TmpWellClass.Name));
FullTableAverage[FullTableAverage.Count - 1].ListTags = new List<object>();
FullTableAverage[FullTableAverage.Count - 1].Name = TmpWellClass.Name;
FullTableAverage[FullTableAverage.Count - 1].Tag = TmpWellClass;
int IdxPlate = 0;
foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
{
FullTableAverage[FullTableAverage.Count - 1].Add(0);
FullTableAverage[FullTableAverage.Count - 1].ListTags.Add(TmpWellClass);
CompleteListOfData[CompleteListOfData.Count - 1].Add(new cExtendedList(TmpPlate.GetName()));
CompleteListOfData[CompleteListOfData.Count - 1][CompleteListOfData[CompleteListOfData.Count - 1].Count - 1].Tag = TmpPlate;
CompleteListOfData[CompleteListOfData.Count - 1][CompleteListOfData[CompleteListOfData.Count - 1].Count - 1].Add(IdxPlate);
IdxPlate++;
}
}
}
TableName += FullTableAverage[0].Count + " plates";
FullTableAverage.Name = TableName;
foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
FullTableAverage.ListRowNames.Add(TmpPlate.GetName());
// cDescriptorsType CurrentDesc = CompleteScreening.ListDescriptors.GetActiveDescriptor();
int RealIdx = 0;
for (int i = 0; i < Input[0].Count; i++)
{
if (Input[0][i] == 1)
{
int IdxPlate = 0;
foreach (cPlate TmpPlate in ListPlates/*CompleteScreening.ListPlatesActive*/)
{
cExtendedList CurrentListValues = new cExtendedList();
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (item.GetCurrentClassIdx() == i))
{
double Value = item.ListSignatures.GetSignature(CurrentDesc).GetValue();
CurrentListValues.Add(Value);
CompleteListOfData[RealIdx][IdxPlate].Add(Value);
}
FullTableAverage[RealIdx][IdxPlate] = CurrentListValues.Mean();
IdxPlate++;
}
RealIdx++;
}
}
cViewerGraph1D VG = new cViewerGraph1D();
VG.Chart.IsLine = true;
VG.Chart.IsShadow = true;
VG.Chart.IsZoomableX = true;
// VG.Chart.IsYGrid = true;
//VG.Chart.IsDisplayValues = true;
VG.Chart.IsLegend = true;
//cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
// CV1.SetInputData(NewTable);
VG.SetInputData(FullTableAverage);
VG.SetInputData(CompleteListOfData);
VG.Chart.LabelAxisX = "Plate";
VG.Chart.LabelAxisY = CurrentDesc.GetName();
VG.Run();
cExtendedControl TmpCtrl = VG.GetOutPut();
TmpCtrl.Title = CurrentDesc.GetName();
DT.SetInputData(TmpCtrl);
}
DT.Run();
CDW1.Title = "Descriptor Evolution";
CDW1.SetInputData(DT.GetOutPut());
CDW1.Run();
CDW1.Display();
return FeedBackMessage;
}
private void ComputeAndDisplayLDA(cListPlates PlatesToProcess)
{
FormClassification WindowClassification = new FormClassification(cGlobalInfo.CurrentScreening);
WindowClassification.buttonClassification.Text = "Process";
WindowClassification.Text = "LDA";
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
int NeutralClass = WindowClassification.comboBoxForNeutralClass.SelectedIndex;
int NumWell = 0;
int NumWellForLearning = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
NumWellForLearning += CurrentPlate.GetNumberOfActiveWellsButClass(NeutralClass);
NumWell += CurrentPlate.GetNumberOfActiveWells();
}
// return;
if (NumWellForLearning == 0)
{
MessageBox.Show("No well identified !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
int NumDesc = cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor();
if (NumDesc <= 1)
{
MessageBox.Show("More than one descriptor are required for this operation", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
double[,] DataForLDA = new double[NumWellForLearning, cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor() + 1];
// return;
Matrix EigenVectors = LDAComputation(DataForLDA, NumWellForLearning, NumWell, NumDesc, NeutralClass, PlatesToProcess);
if (EigenVectors == null) return;
SimpleForm NewWindow = new SimpleForm();
Series CurrentSeries = new Series();
CurrentSeries.ShadowOffset = 1;
Matrix CurrentPt = new Matrix(NumWell, NumDesc);
DataForLDA = new double[NumWell, NumDesc + 1];
for (int desc = 0; desc < NumDesc; desc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[desc].IsActive() == false) continue;
List<double> CurrentDesc = new List<double>();
foreach (cPlate CurrentPlate in PlatesToProcess)
{
for (int IdxValue = 0; IdxValue < cGlobalInfo.CurrentScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < cGlobalInfo.CurrentScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if (TmpWell == null) continue;
CurrentDesc.Add(TmpWell.ListSignatures[desc].GetValue());
}
}
for (int i = 0; i < NumWell; i++)
DataForLDA[i, desc] = CurrentDesc[i];
}
int IDx = 0;
foreach (cPlate CurrentPlate in PlatesToProcess)
{
for (int IdxValue = 0; IdxValue < cGlobalInfo.CurrentScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < cGlobalInfo.CurrentScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if (TmpWell == null) continue;
DataForLDA[IDx++, NumDesc] = TmpWell.GetCurrentClassIdx();
}
}
for (int i = 0; i < NumWell; i++)
for (int j = 0; j < NumDesc; j++) CurrentPt.addElement(i, j, DataForLDA[i, j]);
Matrix NewPt = new Matrix(NumWell, NumDesc);
NewPt = CurrentPt.multiply(EigenVectors);
double MinY = double.MaxValue, MaxY = double.MinValue;
for (int IdxValue0 = 0; IdxValue0 < NumWell; IdxValue0++)
{
double CurrentY = NewPt.getElement(IdxValue0, 1);
if (CurrentY < MinY) MinY = CurrentY;
if (CurrentY > MaxY) MaxY = CurrentY;
CurrentSeries.Points.AddXY(NewPt.getElement(IdxValue0, 0), CurrentY);
CurrentSeries.Points[IdxValue0].Color = cGlobalInfo.ListWellClasses[(int)DataForLDA[IdxValue0, NumDesc]].ColourForDisplay;
CurrentSeries.Points[IdxValue0].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[IdxValue0].MarkerSize = 8;
}
ChartArea CurrentChartArea = new ChartArea();
CurrentChartArea.BorderColor = Color.Black;
NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
string AxeName = "";
int IDxDesc = 0;
for (int Desc = 0; Desc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; Desc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[Desc].IsActive() == false) continue;
AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 0)) + "x" + cGlobalInfo.CurrentScreening.ListDescriptors[Desc].GetName() + " + ";
// AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
}
CurrentChartArea.Axes[0].Title = AxeName.Remove(AxeName.Length - 3);
CurrentChartArea.Axes[0].MajorGrid.Enabled = true;
AxeName = "";
IDxDesc = 0;
for (int Desc = 0; Desc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; Desc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[Desc].IsActive() == false) continue;
AxeName += String.Format("{0:0.###}", EigenVectors.getElement(IDxDesc++, 1)) + "x" + cGlobalInfo.CurrentScreening.ListDescriptors[Desc].GetName() + " + ";
}
//AxeName += String.Format("{0:0.##}", EigenVectors.getElement(CompleteScreening.ListDescriptors.Count - 1, 0)) + "x" + CompleteScreening.ListDescriptorName[CompleteScreening.ListDescriptors.Count - 1];
CurrentChartArea.Axes[1].Title = AxeName.Remove(AxeName.Length - 3);
CurrentChartArea.Axes[1].MajorGrid.Enabled = true;
CurrentChartArea.Axes[1].Minimum = MinY;
CurrentChartArea.Axes[1].Maximum = MaxY;
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
CurrentChartArea.AxisY.LabelStyle.Format = "N2";
CurrentSeries.ChartType = SeriesChartType.Point;
NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
NewWindow.Text = "LDA";
NewWindow.Show();
NewWindow.chartForSimpleForm.Update();
NewWindow.chartForSimpleForm.Show();
NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
}
private void ComputeSystematicErrorsTable()
{
cListPlates LP = new cListPlates();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
cSystematicErrorAnalyzer SEA = new cSystematicErrorAnalyzer();
SEA.PlatesToProcess = LP;
SEA.DescriptorsToProcess = cGlobalInfo.CurrentScreening.GetActiveDescriptors();
SEA.Run(true);
}
public void DisplayXYZ()
{
if (CompleteScreening == null) return;
int DescX = this.comboBoxDescriptorX.SelectedIndex;
int DescY = this.comboBoxDescriptorY.SelectedIndex;
int DescZ = this.comboBoxDescriptorZ.SelectedIndex;
if (DescX < 0) DescX = 0;
if (DescY < 0) DescY = 0;
if (DescZ < 0) DescZ = 0;
int[] Pos = new int[2];
Pos[0] = 0;
Pos[1] = 0;
if (CurrentWorld == null)
{
CurrentWorld = new c3DWorld(new cPoint3D(1000, 1000, 1000), new cPoint3D(ListScales[DescX], ListScales[DescY], ListScales[DescZ]), this.renderWindowControl1, Pos, CompleteScreening);
light = vtkLight.New();
CurrentWorld.SetBackgroundColor(Color.Black);
// CurrentWorld.ren1.AddLight(light);
//CurrentWorld.ren1.RemoveAllLights();
}
CurrentWorld.ren1.RemoveAllViewProps();
// if (widget != null) widget.SetEnabled(0);
Series CurrentSeries = new Series("ScatterPoints");
double MinX = double.MaxValue;
double MinY = double.MaxValue;
double MinZ = double.MaxValue;
double MaxZ = double.MinValue;
double MaxX = double.MinValue;
double MaxY = double.MinValue;
double TempX, TempY, TempZ;
int Idx = 0;
cListPlates ListPlate = new cListPlates();
cMetaBiologicalObjectList ListMeta = new cMetaBiologicalObjectList("Test");
cBiologicalSpot CurrentSpot1 = new cBiologicalSpot(Color.White, new cPoint3D(0, 0, 0), 1, 4);
cMetaBiologicalObject Plate3D = new cMetaBiologicalObject("Data", ListMeta, CurrentSpot1);
if (!IsFullScreen)
ListPlate.Add(CompleteScreening.GetCurrentDisplayPlate());
else
ListPlate = CompleteScreening.ListPlatesActive;
vtkUnsignedCharArray colors = vtkUnsignedCharArray.New();
colors.SetName("colors");
colors.SetNumberOfComponents(3);
vtkPoints Allpoints = vtkPoints.New();
cExtendedList ListPtX = new cExtendedList();
cExtendedList ListPtY = new cExtendedList();
cExtendedList ListPtZ = new cExtendedList();
List<bool> ListCheckBoxes = ClassSelectionPanel.GetListSelectedClass();
for (int i = 0; i < ListPlate.Count; i++)
{
cPlate CurrentPlate = ListPlate[i];
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if ((TmpWell != null) && (ListCheckBoxes[TmpWell.GetCurrentClassIdx()]))
{
TempX = TmpWell.ListSignatures[DescX].GetValue();
if (TempX < MinX) MinX = TempX;
if (TempX > MaxX) MaxX = TempX;
TempY = TmpWell.ListSignatures[DescY].GetValue();
if (TempY < MinY) MinY = TempY;
if (TempY > MaxY) MaxY = TempY;
TempZ = TmpWell.ListSignatures[DescZ].GetValue();
if (TempZ < MinZ) MinZ = TempZ;
if (TempZ > MaxZ) MaxZ = TempZ;
// cBiologicalSpot CurrentSpot = new cBiologicalSpot(TmpWell.GetColor(), new cPoint3D(TempX, TempY, TempZ), 1, 4);
List<char> Col = new List<char>();
Col.Add((char)(TmpWell.GetClassColor().R));
Col.Add((char)(TmpWell.GetClassColor().G));
Col.Add((char)(TmpWell.GetClassColor().B));
// IntPtr unmanagedPointer = Marshal.UnsafeAddrOfPinnedArrayElement(Col.ToArray(), 0);
//colors.InsertNextTupleValue(unmanagedPointer);
colors.InsertNextTuple3(Col[0], Col[1], Col[2]);
ListPtX.Add(TempX);
ListPtY.Add(TempY);
ListPtZ.Add(TempZ);
// CurrentSpot.Name = TmpWell.AssociatedPlate.Name + " - " + TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
// CurrentSpot.ObjectType = TmpWell.AssociatedPlate.Name + " - " + TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
// Plate3D.AddObject(CurrentSpot);
// CurrentWorld.AddBiological3DObject(CurrentSpot);
//CurrentSeries.Points.Add(TempX, TempY);
// if (IsFullScreen)
// CurrentSeries.Points[Idx].ToolTip = TmpWell.AssociatedPlate.Name + "\n" + TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
// else
// CurrentSeries.Points[Idx].ToolTip = TmpWell.GetPosX() + "x" + TmpWell.GetPosY() + " :" + TmpWell.Name;
Idx++;
}
}
}
double MinValueX = ListPtX.Min();
double MaxValueX = ListPtX.Max();
cExtendedList NormX = ListPtX.Normalize(eNormalizationType.MIN_MAX);
if (NormX == null) return;
double MinValueY = ListPtY.Min();
double MaxValueY = ListPtY.Max();
cExtendedList NormY = ListPtY.Normalize(eNormalizationType.MIN_MAX);
if (NormY == null) return;
double MinValueZ = ListPtZ.Min();
double MaxValueZ = ListPtZ.Max();
cExtendedList NormZ = ListPtZ.Normalize(eNormalizationType.MIN_MAX);
if (NormZ == null) return;
for (int IdxPt = 0; IdxPt < ListPtX.Count; IdxPt++)
Allpoints.InsertNextPoint(NormX[IdxPt], NormY[IdxPt], NormZ[IdxPt]);
vtkPolyData polydata = vtkPolyData.New();
polydata.SetPoints(Allpoints);
polydata.GetPointData().SetScalars(colors);
// vtkSphereSource SphereSource = vtkSphereSource.New();
SphereSource.SetRadius(RadiusSphere);
//SphereSource
vtkGlyph3D glyph3D = vtkGlyph3D.New();
glyph3D.SetColorModeToColorByScalar();
glyph3D.SetSourceConnection(SphereSource.GetOutputPort());
glyph3D.SetInput(polydata);
glyph3D.ScalingOff();
glyph3D.Update();
vtkPolyDataMapper mapper = vtkPolyDataMapper.New();
mapper.SetInputConnection(glyph3D.GetOutputPort());
actorSpheres = vtkActor.New();
actorSpheres.SetMapper(mapper);
actorSpheres.GetProperty().SetOpacity(this.SphereOpacity);
CurrentWorld.ren1.AddActor(actorSpheres);
if (this.IsLightAutomated)
{
CurrentWorld.ren1.RemoveAllLights();
CurrentWorld.ren1.AutomaticLightCreationOn();
// this.light.SetIntensity(0);
}
else
{
CurrentWorld.ren1.RemoveAllLights();
CurrentWorld.ren1.AddLight(light);
this.light.SetIntensity(this.LightIntensity);
CurrentWorld.ren1.AutomaticLightCreationOff();
actorSpheres.GetProperty().SetInterpolationToPhong();
actorSpheres.GetProperty().SetAmbient(this.LightAmbient);
actorSpheres.GetProperty().SetDiffuse(this.LightDiffuse);
actorSpheres.GetProperty().SetSpecular(this.LightSpecular);
light.SetFocalPoint(0.5, 0.5, 1);
light.SetPosition(0.5, 0.5, -1);
light.SetDiffuseColor(1, 1, 1);
if (this.IsDisplayLightSource)
{
light.SetPositional(1);
vtkLightActor lightActor = vtkLightActor.New();
lightActor.SetLight(light);
CurrentWorld.ren1.AddViewProp(lightActor);
}
}
#region Connect For DRC
if ((CompleteScreening.GetCurrentDisplayPlate().ListDRCRegions != null) && (cGlobalInfo.OptionsWindow.checkBoxConnectDRCPts.Checked))
{
foreach (cDRC_Region TmpRegion in CompleteScreening.GetCurrentDisplayPlate().ListDRCRegions)
{
int cpt = 0;
cWell[][] ListWells = TmpRegion.GetListWells();
foreach (cWell[] item in ListWells)
{
for (int IdxWell = 0; IdxWell < item.Length - 1; IdxWell++)
{
//cWell TmpWell0 = CompleteScreening.GetCurrentDisplayPlate().GetWell(item[IdxWell], IdxValue0, true);
if ((item[IdxWell] != null) && (item[IdxWell + 1] != null) && (item[IdxWell].GetCurrentClassIdx() >= -1))
{
double StartX = (item[IdxWell].ListSignatures[DescX].GetValue() - MinValueX) / (MaxValueX - MinValueX);
double StartY = (item[IdxWell].ListSignatures[DescY].GetValue() - MinValueY) / (MaxValueY - MinValueY);
double StartZ = (item[IdxWell].ListSignatures[DescZ].GetValue() - MinValueZ) / (MaxValueZ - MinValueZ);
double EndX = (item[IdxWell + 1].ListSignatures[DescX].GetValue() - MinValueX) / (MaxValueX - MinValueX);
double EndY = (item[IdxWell + 1].ListSignatures[DescY].GetValue() - MinValueY) / (MaxValueY - MinValueY);
double EndZ = (item[IdxWell + 1].ListSignatures[DescZ].GetValue() - MinValueZ) / (MaxValueZ - MinValueZ);
cPoint3D StartPt = new cPoint3D(StartX, StartY, StartZ);
cPoint3D EndPt = new cPoint3D(EndX, EndY, EndZ);
c3DLine NewLine = new c3DLine(StartPt, EndPt);
CurrentWorld.AddGeometric3DObject(NewLine);
}
}
}
/*List<cDRC> ListDRC = new List<cDRC>();
for (int i = 0; i < CompleteScreening.ListDescriptors.Count; i++)
{
if (CompleteScreening.ListDescriptors[i].IsActive())
{
cDRC CurrentDRC = new cDRC(TmpRegion, CompleteScreening.ListDescriptors[i]);
ListDRC.Add(CurrentDRC);
cpt++;
}
}
*/
//cDRCDisplay DRCDisplay = new cDRCDisplay(ListDRC, GlobalInfo);
//if (DRCDisplay.CurrentChart.Series.Count == 0) continue;
//DRCDisplay.CurrentChart.Location = new Point((DRCDisplay.CurrentChart.Width + 50) * 0, (DRCDisplay.CurrentChart.Height + 10 + DRCDisplay.CurrentRichTextBox.Height) * h++);
//DRCDisplay.CurrentRichTextBox.Location = new Point(DRCDisplay.CurrentChart.Location.X, DRCDisplay.CurrentChart.Location.Y + DRCDisplay.CurrentChart.Height + 5);
//WindowforDRCsDisplay.LChart.Add(DRCDisplay.CurrentChart);
//WindowforDRCsDisplay.LRichTextBox.Add(DRCDisplay.CurrentRichTextBox);
}
}
#endregion
#region Build axis
// vtkAxesActor axis = vtkAxesActor.New();
vtkAxisActor axisX = vtkAxisActor.New();
axisX.SetPoint1(0, 0, 0);
axisX.SetPoint2(1, 0, 0);
axisX.SetTickLocationToBoth();
axisX.SetDeltaMajor(0.1);
axisX.SetMajorTickSize(0);
axisX.MinorTicksVisibleOff();
//axisX.Maj
CurrentWorld.ren1.AddActor(axisX);
vtkAxisActor axisY = vtkAxisActor.New();
axisY.SetPoint1(0, 0, 0);
axisY.SetPoint2(0, 1, 0);
axisY.SetTickLocationToBoth();
axisY.SetDeltaMajor(0.1);
axisY.SetMajorTickSize(0.05);
axisY.MinorTicksVisibleOff();
CurrentWorld.ren1.AddActor(axisY);
vtkAxisActor axisZ = vtkAxisActor.New();
axisZ.SetPoint1(0, 0, 0);
axisZ.SetPoint2(0, 0, 1);
axisZ.SetTickLocationToBoth();
axisZ.SetDeltaMajor(0.1);
axisZ.SetMajorTickSize(0.05);
axisZ.MinorTicksVisibleOff();
CurrentWorld.ren1.AddActor(axisZ);
if (widget == null)
{
widget = vtkOrientationMarkerWidget.New();
axes = vtkAxesActor.New();
widget.SetOutlineColor(0.9300, 0.5700, 0.1300);
widget.SetInteractor(CurrentWorld.iren);
widget.SetViewport(0.0, 0.0, 0.4, 0.4);
widget.SetEnabled(0);
// widget.InteractiveOn();
if (this.comboBoxDescriptorX.SelectedItem == null)
axes.SetXAxisLabelText(this.comboBoxDescriptorX.Items[0].ToString());
else
axes.SetXAxisLabelText(this.comboBoxDescriptorX.SelectedItem.ToString());
if (this.comboBoxDescriptorY.SelectedItem == null)
axes.SetYAxisLabelText(this.comboBoxDescriptorY.Items[0].ToString());
else
axes.SetYAxisLabelText(this.comboBoxDescriptorY.SelectedItem.ToString());
if (this.comboBoxDescriptorZ.SelectedItem == null)
axes.SetZAxisLabelText(this.comboBoxDescriptorZ.Items[0].ToString());
else
axes.SetZAxisLabelText(this.comboBoxDescriptorZ.SelectedItem.ToString());
widget.SetOrientationMarker(axes);
}
else
{
if (this.comboBoxDescriptorX.SelectedItem != null)
axes.SetXAxisLabelText(this.comboBoxDescriptorX.SelectedItem.ToString());
if (this.comboBoxDescriptorY.SelectedItem != null)
axes.SetYAxisLabelText(this.comboBoxDescriptorY.SelectedItem.ToString());
if (this.comboBoxDescriptorZ.SelectedItem != null)
axes.SetZAxisLabelText(this.comboBoxDescriptorZ.SelectedItem.ToString());
widget.SetOrientationMarker(axes);
}
if ((this.checkBoxForDisplayAxesInformation.Checked) && (ListPtX.Count > 0))
{
double CurrentFontSize = this.FontSize / 400.0;// 0.02;
c3DText MaxAxeX = new c3DText(CurrentWorld, MaxValueX.ToString("N2"), new cPoint3D(1, 0, 0), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MaxAxeX);
c3DText MaxAxeY = new c3DText(CurrentWorld, MaxValueY.ToString("N2"), new cPoint3D(0, 1, 0), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MaxAxeY);
c3DText MaxAxeZ = new c3DText(CurrentWorld, MaxValueZ.ToString("N2"), new cPoint3D(0, 0, 1), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MaxAxeZ);
c3DText MinAxeX = new c3DText(CurrentWorld, MinValueX.ToString("N2"), new cPoint3D(0, -0.1, -0.1), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MinAxeX);
c3DText MinAxeY = new c3DText(CurrentWorld, MinValueY.ToString("N2"), new cPoint3D(-0.1, -0.1, 0), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MinAxeY);
c3DText MinAxeZ = new c3DText(CurrentWorld, MinValueZ.ToString("N2"), new cPoint3D(-0.1, 0, -0.1), Color.White, CurrentFontSize);
CurrentWorld.AddGeometric3DObject(MinAxeZ);
}
#endregion
//vtkCameraWidget Wid = vtkCameraWidget.New();
//Wid.SetInteractor(CurrentWorld.iren);
//Wid.SetEnabled(1);
// Wid.InteractiveOn();
//vtkDistanceWidget distanceWidget = vtkDistanceWidget.New();
//distanceWidget.SetInteractor(CurrentWorld.iren);
//distanceWidget.SetEnabled(1);
//distanceWidget.CreateDefaultRepresentation();
//((vtkDistanceRepresentation)distanceWidget.GetRepresentation()).SetLabelFormat("%-#6.3g mm");
/*static_cast<vtkDistanceRepresentation*>(distanceWidget->GetRepresentation())
->SetLabelFormat("%-#6.3g mm");
*/
// Plate3D.GenerateAndDisplayBoundingBox(1, Color.White, false, CurrentWorld);
//c3DText CaptionX = new c3DText(CurrentWorld, CompleteScreening.ListDescriptors[DescX].GetName(), new cPoint3D(MaxX, MinY, MinZ), Color.DarkRed, this.FontSize);
//c3DLine LineX = new c3DLine(new cPoint3D(MinX, MinY, MinZ), new cPoint3D(MaxX, MinY, MinZ), Color.DarkRed);
//CurrentWorld.AddGeometric3DObject(LineX);
//c3DText CaptionY = new c3DText(CurrentWorld, CompleteScreening.ListDescriptors[DescY].GetName(), new cPoint3D(MinX, MaxY, MinZ), Color.DarkGreen, this.FontSize);
//c3DLine LineY = new c3DLine(new cPoint3D(MinX, MinY, MinZ), new cPoint3D(MinX, MaxY, MinZ), Color.DarkGreen);
//CurrentWorld.AddGeometric3DObject(LineY);
//c3DText CaptionZ = new c3DText(CurrentWorld, CompleteScreening.ListDescriptors[DescZ].GetName(), new cPoint3D(MinX, MinY, MaxZ), Color.DarkBlue, this.FontSize);
//c3DLine LineZ = new c3DLine(new cPoint3D(MinX, MinY, MinZ), new cPoint3D(MinX, MinY, MaxZ), Color.DarkBlue);
//CurrentWorld.AddGeometric3DObject(LineZ);
#region Update ComboBoxes
if (comboBoxDescriptorX.Text == "")
ToolTipForX.SetToolTip(comboBoxDescriptorX, comboBoxDescriptorX.Items[0].ToString());
else
ToolTipForX.SetToolTip(comboBoxDescriptorX, comboBoxDescriptorX.Text);
if (comboBoxDescriptorY.Text == "")
ToolTipForY.SetToolTip(comboBoxDescriptorY, comboBoxDescriptorY.Items[0].ToString());
else
ToolTipForY.SetToolTip(comboBoxDescriptorY, comboBoxDescriptorY.Text);
if (comboBoxDescriptorZ.Text == "")
ToolTipForZ.SetToolTip(comboBoxDescriptorZ, comboBoxDescriptorZ.Items[0].ToString());
else
ToolTipForZ.SetToolTip(comboBoxDescriptorZ, comboBoxDescriptorZ.Text);
#endregion
CurrentWorld.SimpleRender();// Render();
}
private void ToolStripMenuItem_DisplaySingleCellHistogram(object sender, EventArgs e)
{
cListWells ListWells = new cListWells();
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
List<cWellClassType> ListForCurrentClass = new List<cWellClassType>();
ListForCurrentClass.Add(this);
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = true;
GUIClasses.IsSelectAll = true;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cDesignerTab DT = new cDesignerTab();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
ListWells.AddRange(CurrentPlate.ListWells.Filter(ListForCurrentClass));
}
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells";
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = cGlobalInfo.CurrentScreening.GetName();
DT.SetInputData(VSH.GetOutPut());
}
else
{
cListPlates ListPlates = new cListPlates();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeplateByPlateToolStripMenuItem.Checked)
ListPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
else
ListPlates.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate CurrentPlate in ListPlates)
{
ListWells = CurrentPlate.ListWells.Filter(ListForCurrentClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells - " + CurrentPlate.GetName();
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
if (GUIClasses.GetOutPut()[0][Idx] == 0)
{
Idx++;
continue;
}
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = CurrentPlate.GetName();
DT.SetInputData(VSH.GetOutPut());
}
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single Cell Histograms";
DTW.Run();
DTW.Display();
}
public bool DisplayXY()
{
if (CompleteScreening == null) return false;
int DescX = this.comboBoxDescriptorX.SelectedIndex;
int DescY = this.comboBoxDescriptorY.SelectedIndex;
if (DescX < 0) DescX = 0;
if (DescY < 0) DescY = 0;
CurrentSeries = new Series("ScatterPoints");
CurrentSeries.ShadowOffset = 1;
double MinX = double.MaxValue;
double MinY = double.MaxValue;
double MaxX = double.MinValue;
double MaxY = double.MinValue;
double TempX, TempY;
int Idx = 0;
cListPlates ListPlate = new cListPlates();
if (!IsFullScreen)
ListPlate.Add(CompleteScreening.GetCurrentDisplayPlate());
else
ListPlate = CompleteScreening.ListPlatesActive;
for (int i = 0; i < ListPlate.Count; i++)
{
cPlate CurrentPlate = ListPlate[i];
for (int IdxValue = 0; IdxValue < CompleteScreening.Columns; IdxValue++)
for (int IdxValue0 = 0; IdxValue0 < CompleteScreening.Rows; IdxValue0++)
{
cWell TmpWell = CurrentPlate.GetWell(IdxValue, IdxValue0, true);
if (TmpWell != null)
{
TempX = TmpWell.ListSignatures[DescX].GetValue();
if (TempX < MinX) MinX = TempX;
if (TempX > MaxX) MaxX = TempX;
TempY = TmpWell.ListSignatures[DescY].GetValue();
if (TempY < MinY) MinY = TempY;
if (TempY > MaxY) MaxY = TempY;
CurrentSeries.Points.AddXY(TempX, TempY);
CurrentSeries.Points[Idx].Color = TmpWell.GetClassColor();
if (IsFullScreen)
CurrentSeries.Points[Idx].ToolTip = TmpWell.AssociatedPlate.GetName() + "\n" + TmpWell.GetPosX() + "x" + TmpWell.GetPosY();
else
CurrentSeries.Points[Idx].ToolTip = TmpWell.GetPosX() + "x" + TmpWell.GetPosY();
CurrentSeries.Points[Idx].Tag = TmpWell;
CurrentSeries.Points[Idx].MarkerStyle = MarkerStyle.Circle;
CurrentSeries.Points[Idx].MarkerSize = 8;
Idx++;
}
}
}
if (CurrentSeries.Points.Count < 2)
{
MessageBox.Show("Statistical Analyses - More than one data point needed.", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return false;
}
CurrentChartArea.CursorX.IsUserSelectionEnabled = true;
CurrentChartArea.CursorY.IsUserSelectionEnabled = true;
CurrentChartArea.BorderColor = Color.Black;
this.chartForSimpleFormXY.ChartAreas.Clear();
this.chartForSimpleFormXY.ChartAreas.Add(CurrentChartArea);
this.chartForSimpleFormXY.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
CurrentChartArea.BackColor = Color.FromArgb(164, 164, 164);
CurrentChartArea.Axes[0].Title = CompleteScreening.ListDescriptors[DescX].GetName();
CurrentChartArea.Axes[0].Minimum = MinX;
CurrentChartArea.Axes[0].Maximum = MaxX;
CurrentChartArea.Axes[1].Title = CompleteScreening.ListDescriptors[DescY].GetName();
CurrentChartArea.Axes[1].Minimum = MinY;
CurrentChartArea.Axes[1].Maximum = MaxY;
CurrentChartArea.AxisX.LabelStyle.Format = "N2";
CurrentChartArea.AxisY.LabelStyle.Format = "N2";
CurrentSeries.ChartType = SeriesChartType.FastPoint;
this.chartForSimpleFormXY.Series.Clear();
this.chartForSimpleFormXY.Series.Add(CurrentSeries);
this.Text = "Scatter Point / " + Idx + " points";
// this.chartForSimpleFormXY.GetToolTipText += new System.EventHandler<System.Windows.Forms.DataVisualization.Charting.ToolTipEventArgs>(this.chartForSimpleFormXY_GetToolTipText);
this.chartForSimpleFormXY.Update();
return true;
}
void LoadProperty()
{
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
GUI_ListWellProperty.IsCheckBoxes = false;
if (GUI_ListWellProperty.Run().IsSucceed == false) return;
List<cPropertyType> ListSelectedProp = GUI_ListWellProperty.GetOutPut();
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.AddAsObject = true;
CSVT.Run();
cExtendedTable PlateDesign = CSVT.GetOutPut();
if (PlateDesign == null) return;
cListPlates LP = new cListPlates();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
}
else
{
cGUI_ListPlates GUIListPlate = new cGUI_ListPlates();
if (GUIListPlate.Run().IsSucceed == false) return;
LP = GUIListPlate.GetOutPut();
}
for (int Col = 0; Col < cGlobalInfo.CurrentScreening.Columns; Col++)
for (int Row = 0; Row < cGlobalInfo.CurrentScreening.Rows; Row++)
{
if ((Col < PlateDesign.Count) && (Row < PlateDesign[Col].ListTags.Count))
{
object TmpObj = PlateDesign[Col].ListTags[Row];
//string TmpVal = "";
//if (TmpObj != null)
// TmpVal = (string)TmpObj;
foreach (cPlate CurrentPlate in LP)
{
cWell TmpWell = CurrentPlate.GetWell(Col, Row, false);
if ((TmpWell != null))
{
if (TmpObj == null)
{
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else
{
if (/*(TmpObj.GetType() == typeof(string)) &&*/ (ListSelectedProp[0].Type == eDataType.STRING))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (string)TmpObj);
else if (/*(TmpObj.GetType() == typeof(double)) &&*/ (ListSelectedProp[0].Type == eDataType.DOUBLE))
{
double Res;
if (double.TryParse((string)TmpObj, out Res))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, Res);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else if (/*(TmpObj.GetType() == typeof(int)) &&*/ (ListSelectedProp[0].Type == eDataType.INTEGER))
{
int IntRes;
if (int.TryParse((string)TmpObj, out IntRes))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, IntRes);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
}
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)Convert.ToDouble(TmpObj.ToString()));
//else if (TmpObj.GetType() == typeof(int) && (ListSelectedProp[0].Type == eDataType.INTEGER))
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)TmpObj);
}
}
}
}
richTextBoxConsole.AppendText(LP.Count + " plates updated !\n");
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void GeneratePCADescriptorItem(object sender, EventArgs e)
{
FormForProjections WindowClassification = new FormForProjections();
//WindowClassification.buttonClassification.Text = "Process";
WindowClassification.label1.Text = "Class of Interest";
WindowClassification.Text = "PCA";
WindowClassification.IsPCA = true;
WindowClassification.numericUpDownNumberOfAxis.Maximum = cGlobalInfo.CurrentScreening.GetNumberOfActiveDescriptor();
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
ClassSelectionPanel.Height = WindowClassification.panelForClasses.Height;
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(2);
WindowClassification.panelForClasses.Controls.Add(ClassSelectionPanel);
cListPlates PlatesToProcess = new cListPlates(null);
if (WindowClassification.radioButtonFromCurrentPlate.Checked)
PlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
PlatesToProcess = cGlobalInfo.CurrentScreening.ListPlatesActive;
WindowClassification.PlatesToProcess = PlatesToProcess;
if (WindowClassification.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
}
private void displayGraphToolStripMenuItem_Click_1(object sender, EventArgs e)
{
cListPlates ListToProcess = new cListPlates();
ListToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
ComputeAndDisplayLDA(ListToProcess);
}
public void UpDateWellsSelection()
{
int SelectionType = ParentScreening.GetSelectionType();
if (SelectionType == -2) return;
int PosMouseXMax = ParentScreening.ClientPosLast.X;
int PosMouseXMin = ParentScreening.ClientPosFirst.X;
if (ParentScreening.ClientPosFirst.X > PosMouseXMax)
{
PosMouseXMax = ParentScreening.ClientPosFirst.X;
PosMouseXMin = ParentScreening.ClientPosLast.X;
}
int PosMouseYMax = ParentScreening.ClientPosLast.Y;
int PosMouseYMin = ParentScreening.ClientPosFirst.Y;
if (ParentScreening.ClientPosFirst.Y > PosMouseYMax)
{
PosMouseYMax = ParentScreening.ClientPosFirst.Y;
PosMouseYMin = ParentScreening.ClientPosLast.Y;
}
int GutterSize = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownGutter.Value;
int ScrollShiftX = cGlobalInfo.WindowHCSAnalyzer.panelForPlate.HorizontalScroll.Value;
int ScrollShiftY = cGlobalInfo.WindowHCSAnalyzer.panelForPlate.VerticalScroll.Value;
cListPlates ListPlateToProcess = new cListPlates();
if (ParentScreening.IsSelectionApplyToAllPlates == true)
{
ListPlateToProcess = ParentScreening.ListPlatesActive;
}
else
{
ListPlateToProcess.Add(ParentScreening.GetCurrentDisplayPlate());
}
int NumberOfPlates = ParentScreening.ListPlatesActive.Count;
//Point ResMin = cGlobalInfo.WindowHCSAnalyzer.panelForPlate.GetChildAtPoint(new Point(PosMouseXMin, PosMouseYMin));
int PosWellMinX = (int)((PosMouseXMin - ScrollShiftX) / (cGlobalInfo.SizeHistoWidth + GutterSize));
int PosWellMinY = (int)((PosMouseYMin - ScrollShiftY) / (cGlobalInfo.SizeHistoHeight + GutterSize));
int PosWellMaxX = (int)((PosMouseXMax - ScrollShiftX) / (cGlobalInfo.SizeHistoWidth + GutterSize));
int PosWellMaxY = (int)((PosMouseYMax - ScrollShiftY) / (cGlobalInfo.SizeHistoHeight + GutterSize));
if (PosWellMaxX > ParentScreening.Columns) PosWellMaxX = ParentScreening.Columns;
if (PosWellMaxY > ParentScreening.Rows) PosWellMaxY = ParentScreening.Rows;
if (PosWellMinX < 0) PosWellMinX = 0;
if (PosWellMinY < 0) PosWellMinY = 0;
foreach (cPlate CurrentPlate in ListPlateToProcess)
{
for (int j = PosWellMinY; j < PosWellMaxY; j++)
for (int i = PosWellMinX; i < PosWellMaxX; i++)
{
cWell TempWell = CurrentPlate.GetWell(i, j, false);
if (TempWell == null) continue;
if (SelectionType == -1)
TempWell.SetAsNoneSelected();
else
TempWell.SetClass(SelectionType);
}
}
ParentScreening.GetCurrentDisplayPlate().UpdateNumberOfClass();
ParentScreening.UpdateListActiveWell();
}
