public IqMassAndNetAligner(WorkflowExecutorBaseParameters parameters, Run run)
: base(parameters, run)
{
IsDataExported = false;
LoessBandwidthNetAlignment = 0.2;
LoessBandwidthMassAlignment = 0.2;
ScanToNetAlignmentData = new List <ScanNETPair>();
}
public static TargetedWorkflowExecutor CreateTargetedWorkflowExecutor(WorkflowExecutorBaseParameters workflowParameters, string datasetPath)
{
//TODO: add ResultReprocessingWorkflow
switch (workflowParameters.WorkflowType)
{
case Globals.TargetedWorkflowTypes.BasicTargetedWorkflowExecutor1:
return(new BasicTargetedWorkflowExecutor(workflowParameters, datasetPath));
case Globals.TargetedWorkflowTypes.LcmsFeatureTargetedWorkflowExecutor1:
return(new LcmsFeatureTargetedWorkflowExecutor(workflowParameters, datasetPath));
case Globals.TargetedWorkflowTypes.SipperWorkflowExecutor1:
return(new SipperWorkflowExecutor(workflowParameters, datasetPath));
case Globals.TargetedWorkflowTypes.TopDownTargetedWorkflowExecutor1:
return(new TopDownTargetedWorkflowExecutor(workflowParameters, datasetPath));
default:
throw new System.ArgumentException("Workflow type: " + workflowParameters.WorkflowType +
" is not an executor type of workflow");
}
}