public static extern ExceptionStatus core_FileStorage_shift_Vec2b(IntPtr fs, Vec2b val);
public static extern void core_Mat_push_back_Vec2b(IntPtr self, Vec2b v);
public static extern ExceptionStatus core_FileNode_read_Vec2b(IntPtr node, out Vec2b returnValue);
public static vtkImageData OCVFPSuppression(vtkImageData BCI, vtkImageData sample, int axis = 0, double BC_threshold = 0.7 * 255.0, double sample_threshold = 80)
{
//Get dimensions
int[] dims = BCI.GetExtent();
//Get byte data from input samples
byte[] BCIByte = DataTypes.vtkToByte(BCI);
byte[] SampleByte = DataTypes.vtkToByte(sample);
//Output byte array
byte[,,] OutByte = new byte[(dims[1] - dims[0] + 1), (dims[3] - dims[2] + 1), (dims[5] - dims[4] + 1)];
//Loop parameters
int start = 0; int stop = 0; int h = 0; int w = 0; int strideh = 0; int stridew = 0; int pos = 0;
if (axis == 0)
{
start = dims[0];
stop = dims[1] + 1;
h = dims[5] + 1;
w = dims[3] + 1;
strideh = (dims[1] + 1) * (dims[3] + 1);
stridew = 1;
}
if (axis == 1)
{
start = dims[2];
stop = dims[3] + 1;
h = dims[5] + 1;
w = dims[1] + 1;
strideh = (dims[1] + 1) * (dims[3] + 1);
stridew = (dims[3] + 1);
}
if (axis == 2)
{
start = dims[4];
stop = dims[5] + 1;
h = dims[1] + 1;
w = dims[3] + 1;
strideh = dims[3] + 1;
stridew = 1;
}
//Iterate over samples in parallel
Parallel.For(start, stop, (int k) =>
{
//Get slices to OpenCV matrices
Mat BCMat = new Mat(h, w, MatType.CV_8UC1);
var BCIndexer = BCMat.GetGenericIndexer <Vec2b>();
Mat SampleMat = new Mat(h, w, MatType.CV_8UC1);
var SampleIndexer = SampleMat.GetGenericIndexer <Vec2b>();
//Iterate over indices
Parallel.For(0, h, (int kh) =>
{
Parallel.For(0, w, (int kw) =>
{
//Current slice index
if (axis == 0)
{
pos = k * (dims[1] + 1);
}
;
if (axis == 1)
{
pos = k;
}
;
if (axis == 2)
{
pos = k * (dims[1] + 1) * (dims[3] + 1);
}
;
//Current index
int cur = pos + kh * strideh + kw * stridew;
//Get values
Vec2b bcval = BCIndexer[kh, kw];
bcval.Item0 = BCIByte[cur];
bcval.Item1 = BCIByte[cur];
Vec2b sampleval = SampleIndexer[kh, kw];
sampleval.Item0 = SampleByte[cur];
sampleval.Item1 = SampleByte[cur];
//Update matrices
BCIndexer[kh, kw] = bcval;
SampleIndexer[kh, kw] = sampleval;
});
});
if (k == 500)
{
using (var window = new Window("BCMat", image: BCMat, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
using (var window = new Window("Sample", image: SampleMat, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Get binary masks
Mat BCBW = BCMat.Threshold(BC_threshold, 255.0, ThresholdTypes.Binary);
Mat SampleBW = SampleMat.Threshold(sample_threshold, 255.0, ThresholdTypes.Binary);
if (k == 500)
{
using (var window = new Window("BCMat", image: BCBW, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
using (var window = new Window("Sample", image: SampleBW, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Subtract BCI mask from sample mask
Mat D = SampleBW - BCBW;
if (k == 500)
{
using (var window = new Window("D", image: D, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Closing
//Generate structuring element
InputArray element = InputArray.Create(new Mat(1, 50, MatType.CV_8UC1));
D = D.Dilate(element);
D = D.Erode(element);
if (k == 500)
{
using (var window = new Window("D", image: D, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Subtract closed mask from BCI mask
BCBW = BCBW - D;
if (k == 500)
{
using (var window = new Window("Cleaned BC", image: BCBW, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Dilate
BCBW = BCBW.Dilate(element);
if (k == 500)
{
using (var window = new Window("Dilated BC", image: BCBW, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Multiply BCI matrix with the mask
BCMat = BCMat.Mul(BCBW);
BCIndexer = BCMat.GetGenericIndexer <Vec2b>();
if (k == 500)
{
using (var window = new Window("Dilated BC", image: BCBW, flags: WindowMode.AutoSize))
{
Cv2.WaitKey();
}
}
//Return the elements to output byte array
Parallel.For(0, h, (int kh) =>
{
Parallel.For(0, w, (int kw) =>
{
//Get value
Vec2b bcval = BCIndexer[kh, kw];
//Update outputarray
if (axis == 0 && bcval.Item0 > BC_threshold)
{
OutByte[kh, k, kw] = 255;
}
;
if (axis == 1 && bcval.Item0 > BC_threshold)
{
OutByte[kh, kw, k] = 255;
}
;
if (axis == 2 && bcval.Item0 > BC_threshold)
{
OutByte[k, kh, kw] = 255;
}
;
});
});
});
//Convert outputarray to VTK data
return(DataTypes.byteToVTK(OutByte));
}