Exemplo n.º 1
0
        public void test_UnitDefinition_addUnit1()
        {
            UnitDefinition m = new  UnitDefinition(2, 2);
            Unit           p = new  Unit(2, 2);
            int            i = m.addUnit(p);

            assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
            p.setKind(libsbml.UNIT_KIND_MOLE);
            i = m.addUnit(p);
            assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
            assertTrue(m.getNumUnits() == 1);
            p = null;
            m = null;
        }
Exemplo n.º 2
0
            protected override void Because()
            {
                _dimensionFactoy = IoC.Resolve <IMoBiDimensionFactory>();
                sut = new UnitDefinitionImporter(IoC.Resolve <IObjectPathFactory>(), IoC.Resolve <IObjectBaseFactory>(), _dimensionFactoy, IoC.Resolve <ASTHandler>(), A.Fake <IMoBiContext>());
                //create unit "substance"
                _unit = new Unit(3, 1);
                _unit.setExponent(1);
                _unit.setMultiplier(1.0);
                _unit.setScale(0);
                _unit.setKind(libsbml.UNIT_KIND_MOLE);

                //create unitdef "substance"
                _unitDef = _sbmlModel.createUnitDefinition();
                _unitDef.setId("substance");
                _unitDef.setName("substance");
                _unitDef.addUnit(_unit);

                //create unit "volume"
                _unit2 = _sbmlModel.createUnit();
                _unit2.setExponent(1);
                _unit2.setMultiplier(1.0);
                _unit2.setScale(0);
                _unit2.setKind(libsbml.UnitKind_forName("volume"));

                //create unitdef "volume"
                _unitDef2 = _sbmlModel.createUnitDefinition();
                _unitDef2.setId("volume");
                _unitDef2.setName("volume");
                _unitDef2.addUnit(_unit2);

                _sbmlModel.addUnitDefinition(_unitDef);
                sut.DoImport(_sbmlModel, new MoBiProject(), A.Fake <SBMLInformation>(), new MoBiMacroCommand());
                _substanceDimension = _dimensionFactoy.Dimension("SBML_substance");
                _volumeDimension    = _dimensionFactoy.Dimension("Volume");
            }
        public void test_UnitDefinition_isVariantOfSubstancePerTime_4()
        {
            UnitDefinition ud  = new  UnitDefinition(2, 2);
            Unit           dim = ud.createUnit();

            dim.setKind(libsbml.UnitKind_forName("dimensionless"));
            Unit perTime = ud.createUnit();

            perTime.setKind(libsbml.UnitKind_forName("second"));
            perTime.setExponent(-1);
            Unit u = ud.createUnit();

            assertEquals(false, ud.isVariantOfSubstancePerTime());
            u.setKind(libsbml.UNIT_KIND_KILOGRAM);
            u.setExponent(1);
            assertEquals(true, ud.isVariantOfSubstancePerTime());
            u.setScale(-1);
            perTime.setScale(-1);
            assertEquals(true, ud.isVariantOfSubstancePerTime());
            u.setMultiplier(2);
            assertEquals(true, ud.isVariantOfSubstancePerTime());
            u.setOffset(3);
            assertEquals(true, ud.isVariantOfSubstancePerTime());
            u.setExponent(-3);
            assertEquals(false, ud.isVariantOfSubstancePerTime());
            u.setExponent(1);
            perTime.setExponent(-3);
            assertEquals(false, ud.isVariantOfSubstancePerTime());
            perTime.setExponent(-1);
            ud.addUnit(dim);
            assertEquals(true, ud.isVariantOfSubstancePerTime());
            ud = null;
        }
Exemplo n.º 4
0
        public void test_UnitDefinition_addUnit4()
        {
            UnitDefinition m = new  UnitDefinition(2, 2);
            Unit           p = null;
            int            i = m.addUnit(p);

            assertTrue(i == libsbml.LIBSBML_OPERATION_FAILED);
            assertTrue(m.getNumUnits() == 0);
            m = null;
        }
Exemplo n.º 5
0
        public void test_UnitDefinition_addUnit3()
        {
            UnitDefinition m = new  UnitDefinition(2, 2);
            Unit           p = new  Unit(1, 2);

            p.setKind(libsbml.UNIT_KIND_MOLE);
            int i = m.addUnit(p);

            assertTrue(i == libsbml.LIBSBML_LEVEL_MISMATCH);
            assertTrue(m.getNumUnits() == 0);
            p = null;
            m = null;
        }
        public void test_Unit_parent_add()
        {
            UnitDefinition ud = new UnitDefinition(2, 4);
            Unit           u  = new Unit(2, 4);

            u.setKind(libsbml.UNIT_KIND_MOLE);
            ud.addUnit(u);
            u = null;
            assertTrue(ud.getNumUnits() == 1);
            ListOf lo = ud.getListOfUnits();

            assertTrue(lo == ud.getUnit(0).getParentSBMLObject());
            assertTrue(ud == lo.getParentSBMLObject());
            ud = null;
        }
Exemplo n.º 7
0
        public void test_Unit_ancestor_add()
        {
            UnitDefinition ud = new UnitDefinition(2, 4);
            Unit           u  = new Unit(2, 4);

            u.setKind(libsbml.UNIT_KIND_MOLE);
            ud.addUnit(u);
            u = null;
            assertTrue(ud.getNumUnits() == 1);
            ListOf lo  = ud.getListOfUnits();
            Unit   obj = ud.getUnit(0);

            assertTrue(obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud);
            assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo);
            assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null);
            assertTrue(obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null);
            ud = null;
        }
        protected override void Because()
        {
            sut = IoC.Resolve <IUnitDefinitionImporter>();
            //create unit "substance"
            _unit = new Unit(3, 1);
            _unit.setExponent(1);
            _unit.setMultiplier(1.0);
            _unit.setScale(0);
            _unit.setKind(libsbml.UNIT_KIND_MOLE);

            //create unitdef "substance"
            _unitDef = _sbmlModel.createUnitDefinition();
            _unitDef.setId("substance");
            _unitDef.setName("substance");
            _unitDef.addUnit(_unit);

            //create unit "volume"
            _unit2 = _sbmlModel.createUnit();
            _unit2.setExponent(1);
            _unit2.setMultiplier(1.0);
            _unit2.setScale(0);
            _unit2.setKind(libsbml.UnitKind_forName("volume"));

            //create unitdef "volume"
            _unitDef2 = _sbmlModel.createUnitDefinition();
            _unitDef2.setId("volume");
            _unitDef2.setName("volume");
            _unitDef2.addUnit(_unit2);

            _unit3 = _sbmlModel.createUnit();
            _unit3.setExponent(-1);
            _unit3.setMultiplier(1 / 86400.0); //86400 seconds in one day
            _unit3.setScale(0);
            _unit3.setKind(libsbml.UnitKind_forName("second"));

            _unitDef3 = _sbmlModel.createUnitDefinition();
            _unitDef3.setId("inverse_day");
            _unitDef3.setName("1/d");
            _unitDef3.addUnit(_unit3);


            _sbmlModel.addUnitDefinition(_unitDef);
            sut.DoImport(_sbmlModel, new MoBiProject(), A.Fake <SBMLInformation>(), new MoBiMacroCommand());
        }
        public void test_SBMLDocument_setLevelAndVersion_Error()
        {
            SBMLDocument d = new  SBMLDocument();

            d.setLevelAndVersion(2, 1, true);
            Model m1 = new  Model(2, 1);
            Unit  u  = new  Unit(2, 1);

            u.setKind(libsbml.UnitKind_forName("mole"));
            u.setOffset(3.2);
            UnitDefinition ud = new  UnitDefinition(2, 1);

            ud.setId("ud");
            ud.addUnit(u);
            m1.addUnitDefinition(ud);
            d.setModel(m1);
            assertTrue(d.setLevelAndVersion(2, 2, true) == false);
            assertTrue(d.setLevelAndVersion(2, 3, true) == false);
            assertTrue(d.setLevelAndVersion(1, 2, true) == false);
            assertTrue(d.setLevelAndVersion(1, 1, true) == false);
            d = null;
        }
Exemplo n.º 10
0
        public void test_UnitDefinition_addUnit()
        {
            Unit u = new  Unit(2, 4);

            u.setKind(libsbml.UNIT_KIND_MOLE);
            UD.addUnit(u);
            assertTrue(UD.getNumUnits() == 1);
            u = null;
        }