/// <summary>
/// This function trigges when an interpretation is double clicked.
/// It prepares the annotation and spectrum viewer panels.
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
public void triggerSpectrumViewer(object sender, EventArgs e)
{
// Get the current row
DataGridViewRow row = spectraGrid.CurrentRow;
if (row != null)
{
// Get the result and variant objects associated with this row
Object[] tags = row.Tag as Object[];
SpectrumInfo spectrum = tags[0] as SpectrumInfo;
VariantInfo variant = tags[1] as VariantInfo;
if (spectrum != null && currentSpectraGridSelection != row)
{
try {
// Resolve the spectrum source
var source = Path.GetFileNameWithoutExtension(spectrum.id.source.name);
var paths = Properties.Settings.Default.SourcePath.Split(";".ToCharArray());
var matches = Util.FindFileInSearchPath(source, new string[] { "mzXML", "mzML", "mgf", "RAW" }, paths.ToArray(), true);
if (matches.Length == 0)
{
MessageBox.Show("Can't find source. Set the source folder path.");
}
else
{
// Convert the interpretation for seems compatibility
var interpetation = variant.ToSimpleString();
interpetation = interpetation.Replace('(', '[');
interpetation = interpetation.Replace(')', ']');
splitContainer4.Panel2.Hide();
splitContainer1.Panel2.Hide();
splitContainer5.Panel1.Hide();
splitContainer5.Panel2.Hide();
Application.DoEvents();
UniqueSpectrumID uniqueSpectrumID;
// Create a spectrum viewer and add its components
if (spectrum.nativeID != null && spectrum.nativeID.Length > 0)
{
currentSpectrumViewer = new SpectrumViewer(matches[0], spectrum.nativeID, interpetation);
uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.nativeID, spectrum.id.charge);
}
else
{
currentSpectrumViewer = new SpectrumViewer(matches[0], spectrum.id.index, interpetation);
uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.id.index, spectrum.id.charge);
}
splitContainer4.Panel2.Controls.Clear();
splitContainer4.Panel2.Controls.Add(currentSpectrumViewer.annotationPanel);
splitContainer5.Panel1.Controls.Clear();
splitContainer5.Panel1.Controls.Add(currentSpectrumViewer.spectrumPanel);
splitContainer5.Panel2.Controls.Clear();
splitContainer5.Panel2.Controls.Add(currentSpectrumViewer.fragmentationPanel);
splitContainer5.Panel2.AutoScroll = true;
splitContainer1.Panel2.Controls.Add(splitContainer5);
splitContainer1.Panel2.Show();
splitContainer4.Panel2.Show();
splitContainer5.Panel1.Show();
splitContainer5.Panel2.Show();
Application.DoEvents();
// If we have a seconday result associated with this spectrum,
// set the mechanism in spectrum viewer to see it.
if (alternativeInterpretations != null)
{
if (alternativeInterpretations.Contains(uniqueSpectrumID))
{
VariantInfo alt = alternativeInterpretations[uniqueSpectrumID];
interpetation = alt.ToSimpleString();
interpetation = interpetation.Replace('(', '[');
interpetation = interpetation.Replace(')', ']');
currentSpectrumViewer.setSecondarySequence(interpetation);
}
}
currentSpectraGridSelection = row;
}
} catch (Exception exp) {
MessageBox.Show(exp.StackTrace);
MessageBox.Show("Failed to show spectrum. Check raw data path.");
}
}
}
}
/// <summary>
/// This function trigges when an interpretation is double clicked.
/// It prepares the annotation and spectrum viewer panels.
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
public void triggerSpectrumViewer(object sender, EventArgs e)
{
// Get the current row
DataGridViewRow row = spectraGrid.CurrentRow;
if(row != null)
{
// Get the result and variant objects associated with this row
Object[] tags = row.Tag as Object[];
SpectrumInfo spectrum = tags[0] as SpectrumInfo;
VariantInfo variant = tags[1] as VariantInfo;
if (spectrum != null && currentSpectraGridSelection != row)
{
try {
// Resolve the spectrum source
var source = Path.GetFileNameWithoutExtension(spectrum.id.source.name);
var paths = Properties.Settings.Default.SourcePath.Split(";".ToCharArray());
var matches = Util.FindFileInSearchPath(source, new string[] { "mzXML", "mzML", "mgf", "RAW" }, paths.ToArray(), true);
if(matches.Length == 0)
MessageBox.Show("Can't find source. Set the source folder path.");
else
{
// Convert the interpretation for seems compatibility
var interpetation = variant.ToSimpleString();
interpetation = interpetation.Replace('(', '[');
interpetation = interpetation.Replace(')', ']');
splitContainer4.Panel2.Hide();
splitContainer1.Panel2.Hide();
splitContainer5.Panel1.Hide();
splitContainer5.Panel2.Hide();
Application.DoEvents();
UniqueSpectrumID uniqueSpectrumID;
// Create a spectrum viewer and add its components
if(spectrum.nativeID!=null && spectrum.nativeID.Length>0)
{
currentSpectrumViewer = new SpectrumViewer(matches[0],spectrum.nativeID,interpetation);
uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.nativeID, spectrum.id.charge);
}
else
{
currentSpectrumViewer = new SpectrumViewer(matches[0], spectrum.id.index, interpetation);
uniqueSpectrumID = new UniqueSpectrumID(source, spectrum.id.index, spectrum.id.charge);
}
splitContainer4.Panel2.Controls.Clear();
splitContainer4.Panel2.Controls.Add(currentSpectrumViewer.annotationPanel);
splitContainer5.Panel1.Controls.Clear();
splitContainer5.Panel1.Controls.Add(currentSpectrumViewer.spectrumPanel);
splitContainer5.Panel2.Controls.Clear();
splitContainer5.Panel2.Controls.Add(currentSpectrumViewer.fragmentationPanel);
splitContainer5.Panel2.AutoScroll = true;
splitContainer1.Panel2.Controls.Add(splitContainer5);
splitContainer1.Panel2.Show();
splitContainer4.Panel2.Show();
splitContainer5.Panel1.Show();
splitContainer5.Panel2.Show();
Application.DoEvents();
// If we have a seconday result associated with this spectrum,
// set the mechanism in spectrum viewer to see it.
if(alternativeInterpretations != null)
{
if (alternativeInterpretations.Contains(uniqueSpectrumID))
{
VariantInfo alt = alternativeInterpretations[uniqueSpectrumID];
interpetation = alt.ToSimpleString();
interpetation = interpetation.Replace('(', '[');
interpetation = interpetation.Replace(')', ']');
currentSpectrumViewer.setSecondarySequence(interpetation);
}
}
currentSpectraGridSelection = row;
}
} catch(Exception exp) {
MessageBox.Show(exp.StackTrace);
MessageBox.Show("Failed to show spectrum. Check raw data path.");
}
}
}
}
