protected override bool IsMatch(PeptideDocNode nodePep)
{
// Populate look-ups for later to be able to determine if transitions
// are fully matched or not.
_dictChargeToMatchInfo = new Dictionary<int, TransitionMatchInfo>();
foreach (var nodeGroup in nodePep.TransitionGroups)
{
TransitionMatchInfo matchInfo;
int charge = nodeGroup.TransitionGroup.PrecursorCharge;
if (!_dictChargeToMatchInfo.TryGetValue(charge, out matchInfo))
{
matchInfo = new TransitionMatchInfo();
_dictChargeToMatchInfo.Add(charge, matchInfo);
}
matchInfo.AddTransitionGroup(nodeGroup);
foreach (var nodeTran in nodeGroup.Transitions)
{
matchInfo.AddTransition(nodeTran, nodeGroup);
}
}
// Not actually looking for peptides
return false;
}
protected override bool IsMatch(PeptideDocNode nodePep)
{
// Populate look-ups for later to be able to determine if transitions
// are fully matched or not.
_dictChargeToMatchInfo = new Dictionary <Adduct, TransitionMatchInfo>();
foreach (var nodeGroup in nodePep.TransitionGroups)
{
TransitionMatchInfo matchInfo;
var charge = nodeGroup.TransitionGroup.PrecursorAdduct.Unlabeled; // Ignore any isotope labels embedded in adduct (e.g. read M5C13+2H as M+2H)
if (!_dictChargeToMatchInfo.TryGetValue(charge, out matchInfo))
{
matchInfo = new TransitionMatchInfo();
_dictChargeToMatchInfo.Add(charge, matchInfo);
}
matchInfo.AddTransitionGroup(nodeGroup);
foreach (var nodeTran in nodeGroup.Transitions)
{
matchInfo.AddTransition(nodeTran, nodeGroup);
}
}
// Not actually looking for peptides
return(false);
}
protected override bool IsMatch(PeptideDocNode nodePep)
{
// Populate look-ups for later to be able to determine if transitions
// are fully matched or not.
_dictChargeToMatchInfo = new Dictionary <int, TransitionMatchInfo>();
foreach (var nodeGroup in nodePep.TransitionGroups)
{
TransitionMatchInfo matchInfo;
int charge = nodeGroup.TransitionGroup.PrecursorCharge;
if (!_dictChargeToMatchInfo.TryGetValue(charge, out matchInfo))
{
matchInfo = new TransitionMatchInfo();
_dictChargeToMatchInfo.Add(charge, matchInfo);
}
matchInfo.AddTransitionGroup(nodeGroup);
foreach (var nodeTran in nodeGroup.Transitions)
{
matchInfo.AddTransition(nodeTran, nodeGroup);
}
}
// Not actually looking for peptides
return(false);
}
