private void AppendLog(string logs)
{
if (TextBoxLog.Text.Length > 20000)
{
TextBoxLog.Text = TextBoxLog.Text.Substring(10000);
}
TextBoxLog.AppendText(Environment.NewLine + logs);
}
public MainWindow()
{
InitializeComponent();
DataContext = new ViewModel(msg =>
{
TextBoxLog.AppendText(msg + Environment.NewLine);
TextBoxLog.ScrollToEnd();
});
}
public void AddTextLog(string text)
{
this.Invoke(new MethodInvoker(delegate()
{
TextBoxLog.AppendText(string.Format("\r\n{0}", text));
this.Refresh();
this.Update();
}));
}
private void AppendLogText(string message)
{
if (CheckAndInvokeIfRequired(() => AppendLogText(message)))
{
return;
}
var logMessage = $"{DateTime.Now} - {message}";
Debug.WriteLine(logMessage);
TextBoxLog.AppendText($"{logMessage}\r\n");
}
public void LogMessage(string message, Color color, Font font)
{
if (this.TextBoxLog.InvokeRequired)
{
LogMessageCallback CB = new LogMessageCallback(LogMessage);
this.Invoke(CB, new object[] { message, color, font });
}
else
{
TextBoxLog.AppendText(message, color, font);
TextBoxLog.ScrollToCaret();
}
}
public void PlotSEPro()
{
LoadNRecords();
List <string> identifiedProt = new List <string>();
if ((bool)CheckBoxUnique.IsChecked)
{
identifiedProt = (from p in pckg.MyProteins.MyProteinList
where p.PeptideResults.Exists(x => x.MyMapableProteins.Count == 1)
//where p.PeptideResults.Exists(b => b.NoMyMapableProteins == 1)
select p.Locus).ToList();
}
else
{
identifiedProt = pckg.MyProteins.MyProteinList.Select(a => a.Locus).ToList();
}
//clean possible np tags
//for (int i = 0; i < identifiedProt.Count; i++)
//{
// identifiedProt[i] = Regex.Replace(identifiedProt[i], "nxp:NX_", "");
// identifiedProt[i] = Regex.Replace(identifiedProt[i], "-[0-9]+", "");
//}
LabelProteins.Content = identifiedProt.Count;
List <NextProtRecord> identifiedRecords = (from rec in nRecords
where identifiedProt.Contains(rec.ID)
select rec).ToList();
//Get all the proteins that did not map------------------------
List <string> unmapped = (from p in pckg.MyProteins.MyProteinList
where !identifiedRecords.Exists(a => a.ID.Contains(p.Locus))
select p.Locus).ToList();
TextBoxLog.AppendText("Unmapped IDs\n");
TextBoxLog.AppendText(string.Join(", ", unmapped));
//--------------------------------------------------------------
Plot(identifiedRecords);
var result = from r in identifiedRecords
from p in pckg.MyProteins.MyProteinList
where r.ID.Contains(p.Locus)
select new
{
ID = p.Locus,
NoUniquePeptides = p.PeptideResults.Count(c => c.NoMyMapableProteins == 1),
SequenceCount = p.SequenceCount,
Chr = r.Chr,
Antibody = r.AntiBody,
Proteomics = r.Proteomics,
Description = p.Description
};
//var result = from p in pckg.MyProteins.MyProteinList
// where identifiedRecords.Exists(b => p.Locus.Contains(b.ID))
// select new
// {
// ID = p.Locus,
// NoUniquePeptides = p.PeptideResults.Count(c => c.NoMyMapableProteins == 1),
// SequenceCount = p.SequenceCount,
// SpecCount = p.SpectrumCount,
// Chr = identifiedIDs.Find(d => p.Locus.Contains(d.Item1)).Item2,
// Antibody = identifiedIDs.Find(d => p.Locus.Contains(d.Item1)).Item3,
// Proteomics = identifiedIDs.Find(d => p.Locus.Contains(d.Item1)).Item4,
// Description = p.Description
// };
DataGridInterestingProteins.ItemsSource = result;
}
private void Alg_Iteration(object sender, AlgorithmEventArgs e)
{
string log = $"Iteration: {e.IterationNumber}, Sum of errors: {e.SumOfErrors}, Sum of squared errors: {e.SumOfSquaredErrors}";
TextBoxLog.AppendText(log + Environment.NewLine);
}