public void GetOverlapFractions_ReturnNulls_DifferentChroms()
{
var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, 1, 2);
var variant = new SimpleVariant(ChromosomeUtilities.Chr2, 1, 2, null, null, VariantType.deletion);
var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant);
Assert.Null(reciprocalOverlap);
Assert.Null(annotationOverlap);
}
public void GetOverlapFractions_ReturnNulls_BreakEnd()
{
var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, 2, 1);
var variant = new SimpleVariant(ChromosomeUtilities.Chr1, 1, 2, null, null, VariantType.translocation_breakend);
var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant);
Assert.Null(reciprocalOverlap);
Assert.Null(annotationOverlap);
}
public void GetOverlapFractions_NotNull_AsExpected(int varStart, int varEnd, int saStart, int saEnd, double expectedReciprocalOverlap, double expecedAnnotationOverlap)
{
var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, saStart, saEnd);
var variant = new SimpleVariant(ChromosomeUtilities.Chr1, varStart, varEnd, null, null, VariantType.deletion);
var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant);
Assert.NotNull(reciprocalOverlap);
Assert.NotNull(annotationOverlap);
Assert.Equal(expectedReciprocalOverlap, reciprocalOverlap.Value, 5);
Assert.Equal(expecedAnnotationOverlap, annotationOverlap.Value, 5);
}