public void testInitAllTables()
{
foreach (String id in _STAGING.getTableIds())
{
StagingTable table = _STAGING.getTable(id);
Assert.IsNotNull(table);
Assert.IsNotNull(table.getAlgorithm());
Assert.IsNotNull(table.getVersion());
Assert.IsNotNull(table.getName());
}
}
public void testExternalLoad()
{
Assert.AreEqual("testing", _STAGING.getAlgorithm());
Assert.AreEqual("99.99", _STAGING.getVersion());
Assert.AreEqual(1, _STAGING.getSchemaIds().Count);
Assert.AreEqual(62, _STAGING.getTableIds().Count);
StagingSchema schema = _STAGING.getSchema("urethra");
Assert.IsNotNull(schema);
Assert.AreEqual("testing", schema.getAlgorithm());
Assert.AreEqual("99.99", schema.getVersion());
StagingTable table = _STAGING.getTable("ajcc_descriptor_codes");
Assert.IsNotNull(table);
Assert.AreEqual("testing", table.getAlgorithm());
Assert.AreEqual("99.99", table.getVersion());
Assert.AreEqual(6, table.getTableRows().Count);
HashSet <String> involved = _STAGING.getInvolvedTables("urethra");
Assert.AreEqual(62, involved.Count);
Assert.IsTrue(involved.Contains("mets_eval_ipa"));
StagingData data = new StagingData();
data.setInput("site", "C680");
data.setInput("hist", "8000");
data.setInput("behavior", "3");
data.setInput("grade", "9");
data.setInput("year_dx", "2013");
data.setInput("cs_input_version_original", "020550");
data.setInput("extension", "100");
data.setInput("extension_eval", "9");
data.setInput("nodes", "100");
data.setInput("nodes_eval", "9");
data.setInput("mets", "10");
data.setInput("mets_eval", "9");
// perform the staging
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
Assert.AreEqual("urethra", data.getSchemaId());
Assert.AreEqual(0, data.getErrors().Count);
Assert.AreEqual(37, data.getPath().Count);
// check output
Assert.AreEqual("129", data.getOutput("schema_number"));
Assert.AreEqual("020550", data.getOutput("csver_derived"));
// AJCC 6
Assert.AreEqual("70", data.getOutput("stor_ajcc6_stage"));
// AJCC 7
Assert.AreEqual("700", data.getOutput("stor_ajcc7_stage"));
// Summary Stage
Assert.AreEqual("7", data.getOutput("stor_ss77"));
Assert.AreEqual("7", data.getOutput("stor_ss2000"));
}
// Initialize data provider
private void init(Stream inStream)
{
HashSet <String> algorithms = new HashSet <String>();
HashSet <String> versions = new HashSet <String>();
using (ZipArchive archive = new ZipArchive(inStream, ZipArchiveMode.Read))
{
foreach (ZipArchiveEntry entry in archive.Entries)
{
if ((entry.Name.Length == 0) || (!entry.Name.EndsWith(".json")))
{
continue;
}
if (entry.FullName.StartsWith("tables"))
{
String s = extractEntry(entry);
StagingTable table = new StagingTable();
table = Newtonsoft.Json.JsonConvert.DeserializeObject <StagingTable>(s);
if (DebugSettings.DEBUG_LOADED_TABLES)
{
Debug.WriteLine("Table: ");
Debug.WriteLine(table.GetDebugString(" "));
}
initTable(table);
algorithms.Add(table.getAlgorithm());
versions.Add(table.getVersion());
_tables[table.getId()] = table;
}
else if (entry.FullName.StartsWith("schemas"))
{
String s = extractEntry(entry);
StagingSchema schema = new StagingSchema();
schema = Newtonsoft.Json.JsonConvert.DeserializeObject <StagingSchema>(s);
if (DebugSettings.DEBUG_LOADED_SCHEMAS)
{
Debug.WriteLine("Schema: ");
Debug.WriteLine(schema.GetDebugString(" "));
}
initSchema(schema);
algorithms.Add(schema.getAlgorithm());
versions.Add(schema.getVersion());
_schemas[schema.getId()] = schema;
}
}
}
// verify that all the algorithm names and versions are consistent
if (algorithms.Count != 1)
{
throw new System.InvalidOperationException("Error initializing provider; only a single algorithm should be included in file");
}
if (versions.Count != 1)
{
throw new System.InvalidOperationException("Error initializing provider; only a single version should be included in file");
}
HashSet <String> .Enumerator enumAlg = algorithms.GetEnumerator();
HashSet <String> .Enumerator enumVer = versions.GetEnumerator();
enumAlg.MoveNext();
enumVer.MoveNext();
_algorithm = enumAlg.Current;
_version = enumVer.Current;
GenerateSchemaIds();
GenerateTableIds();
// finally, initialize any caches now that everything else has been set up
invalidateCache();
}