/// <summary>
/// Copies the peaks in view to the user's clipboard.
/// </summary>
private void SaveToClipboardImplementation()
{
if (this.currentSpectrum == null)
{
return;
}
if (this.peakDataPoints == null)
{
this.peakDataPoints = new IList <PeakDataPoint> [0];
}
var fragmentPeaks =
this.peakDataPoints.SelectMany(peaks => peaks)
.Where(peak => !peak.X.Equals(double.NaN))
.Where(peak => !peak.Y.Equals(double.NaN))
.OrderBy(peak => peak.X)
.ToArray();
var peakExporter = new SpectrumPeakExporter(string.Empty, null, IcParameters.Instance.ProductIonTolerancePpm);
peakExporter.ExportToClipBoard(
this.currentSpectrum,
fragmentPeaks,
this.PlotModel.XAxis.ActualMinimum,
this.PlotModel.XAxis.ActualMaximum);
}
/// <summary>
/// Prompt user for file path and save spectrum as TSV to that path.
/// </summary>
private void SaveAsTsvImplementation()
{
if (this.currentSpectrum == null)
{
return;
}
if (this.peakDataPoints == null)
{
this.peakDataPoints = new IList <PeakDataPoint> [0];
}
var filePath = this.dialogService.SaveFile(".tsv", @"TSV Files (*.tsv)|*.tsv");
if (string.IsNullOrWhiteSpace(filePath))
{
return;
}
var fragmentPeaks =
this.peakDataPoints.SelectMany(peaks => peaks)
.Where(peak => !peak.X.Equals(double.NaN))
.Where(peak => !peak.Y.Equals(double.NaN))
.OrderBy(peak => peak.X)
.ToArray();
var peakExporter = new SpectrumPeakExporter(string.Empty, null, IcParameters.Instance.ProductIonTolerancePpm);
peakExporter.Export(
this.currentSpectrum,
fragmentPeaks,
filePath);
}
/// <summary>
/// Prompt user for file path and save data table as list.
/// </summary>
private void SaveDataTableImpl()
{
var filePath = this.dialogService.SaveFile(".tsv", @"Tab-separated value Files (*.tsv)|*.tsv");
if (string.IsNullOrWhiteSpace(filePath))
{
return;
}
try
{
var directory = Path.GetDirectoryName(filePath);
if (directory == null || !Directory.Exists(directory))
{
throw new FormatException(
string.Format("Cannot save image due to invalid file name: {0}", filePath));
}
var peakExporter = new SpectrumPeakExporter(filePath);
peakExporter.Export(this.DataTable.Where(p => !p.X.Equals(double.NaN)).ToList());
}
catch (Exception e)
{
this.dialogService.ExceptionAlert(e);
}
}
/// <summary>
/// Gets a command that exports the spectra peaks to TSV for the selected identifications.
/// </summary>
/// <returns>Task that asynchronously exports plots.</returns>
private async Task ExportPeaksImplementation()
{
var folderPath = this.dialogService.OpenFolder();
if (!string.IsNullOrEmpty(folderPath))
{
var exporter = new SpectrumPeakExporter(folderPath);
await exporter.ExportAsync(this.FilteredData);
}
}
public void TestMassExportPeakLists(string rawFile, string idFile)
{
// Read files
var lcms = PbfLcMsRun.GetLcMsRun(rawFile);
var idFileReader = IdFileReaderFactory.CreateReader(idFile);
var ids = idFileReader.Read().ToList();
foreach (var id in ids)
{
id.LcMs = lcms;
id.RawFileName = Path.GetFileNameWithoutExtension(rawFile);
}
var outputDir = MsPathFinderTest.CreateTestResultDirectory("ExporterTest");
var exporter = new SpectrumPeakExporter(outputDir.FullName);
exporter.Export(ids.ToList());
}
public void TestMassExportPeakLists(string rawFile, string idFile)
{
// Read files
var lcms = PbfLcMsRun.GetLcMsRun(rawFile);
var idFileReader = IdFileReaderFactory.CreateReader(idFile);
var ids = idFileReader.Read();
foreach (var id in ids)
{
id.LcMs = lcms;
id.RawFileName = Path.GetFileNameWithoutExtension(rawFile);
}
var dirPath = @"C:\Users\wilk011\Documents\DataFiles\TestResults\ExporterTest";
Directory.CreateDirectory(dirPath);
var exporter = new SpectrumPeakExporter(dirPath);
exporter.Export(ids.ToList());
}