/// <summary>
/// Get species fact (Swedish history or Swedish occurrence)
/// for specified taxon.
/// </summary>
/// <param name="factor">Get species fact for this factor.</param>
/// <param name="taxon">Get species fact for this taxon.</param>
/// <returns>Species fact (Swedish history and Swedish occurrence) for specified taxon.</returns>
public ArtDatabanken.Data.SpeciesFact GetSpeciesFact(IUserContext userContext, ArtDatabanken.Data.FactorId factor, ITaxon taxon)
{
Dictionary <ArtDatabanken.Data.FactorId, ArtDatabanken.Data.SpeciesFact> speciesFacts;
List <ArtDatabanken.Data.FactorId> factorIds;
List <ITaxon> allTaxa;
ArtDatabanken.Data.SpeciesFact speciesFact;
speciesFact = null;
if (_allSpeciesFacts.IsNull())
{
// Get species facts.
factorIds = new List <ArtDatabanken.Data.FactorId>();
factorIds.Add(ArtDatabanken.Data.FactorId.SwedishHistory);
factorIds.Add(ArtDatabanken.Data.FactorId.SwedishOccurrence);
allTaxa = new List <ITaxon>();
allTaxa.AddRange(TaxonTree.GetTaxa().GetGenericList());
_allSpeciesFacts = SpeciesFactHelper.GetSpeciesFacts(userContext, allTaxa, factorIds);
}
if (_allSpeciesFacts.ContainsKey(taxon.Id))
{
speciesFacts = _allSpeciesFacts[taxon.Id];
if (speciesFacts.ContainsKey(factor))
{
speciesFact = speciesFacts[factor];
}
}
return(speciesFact);
}
/// <summary>
/// Reads species fact.
/// </summary>
/// <param name="taxon">
/// The taxon.
/// </param>
private void InitSpeciesFact(ITaxon taxon)
{
Stopwatch sp = new Stopwatch();
sp.Start();
try
{
Dictionary <FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetCommonDyntaxaSpeciesFacts(_user, taxon);
dicSpeciesFacts.TryGetValue(FactorId.SwedishOccurrence, out _swedishOccourrenceFact);
dicSpeciesFacts.TryGetValue(FactorId.SwedishHistory, out _swedishHistoryFact);
}
catch (Exception)
{
// the taxon did not exist in Artfakta
}
sp.Stop();
Debug.WriteLine("Retrieving species fact: {0:N0} milliseconds", sp.ElapsedMilliseconds);
}
/// <summary>
/// Init swedish occurence and swedish history factor enum value lists.
/// </summary>
private void InitSpeciesFacts(IUserContext userContext)
{
Dictionary <ArtDatabanken.Data.FactorId, IList <ArtDatabanken.Data.FactorFieldEnumValue> > factorEnumValues;
factorEnumValues = SpeciesFactHelper.GetFactorsValueLists(userContext, new[] { ArtDatabanken.Data.FactorId.SwedishOccurrence, ArtDatabanken.Data.FactorId.SwedishHistory });
FilterSwedishOccurrenceValues = new List <ExportSpeciesFactFactorValue>();
//SwedishOccurrenceValues.Add(ExportSpeciesFactFactorValue.CreateValueMissingFactorValue(true));
foreach (ArtDatabanken.Data.FactorFieldEnumValue enumValue in factorEnumValues[ArtDatabanken.Data.FactorId.SwedishOccurrence])
{
FilterSwedishOccurrenceValues.Add(ExportSpeciesFactFactorValue.Create(enumValue, true));
}
FilterSwedishHistoryValues = new List <ExportSpeciesFactFactorValue>();
//SwedishHistoryValues.Add(ExportSpeciesFactFactorValue.CreateValueMissingFactorValue(true));
foreach (ArtDatabanken.Data.FactorFieldEnumValue enumValue in factorEnumValues[ArtDatabanken.Data.FactorId.SwedishHistory])
{
FilterSwedishHistoryValues.Add(ExportSpeciesFactFactorValue.Create(enumValue, true));
}
}
public void SetTaxon(ITaxon taxon, MatchSettingsViewModel options)
{
IUserContext userContext = CoreData.UserManager.GetCurrentUser();
this.TaxonId = taxon.Id;
this.ScientificName = taxon.ScientificName;
this.GUID = taxon.Guid;
this.Author = taxon.Author;
this.CommonName = taxon.CommonName.IsNotEmpty() ? taxon.CommonName : "";
this.TaxonCategory = taxon.Category.Name;
if (options.OutputRecommendedGUID)
{
this.RecommendedGUID = taxon.GetRecommendedGuid(userContext);
}
if (options.OutputSwedishOccurrence)
{
try
{
//Dictionary<FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetSpeciesFacts(taxon, new[] { FactorId.SwedishOccurence, FactorId.SwedishHistory });
Dictionary <ArtDatabanken.Data.FactorId, ArtDatabanken.Data.SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetCommonDyntaxaSpeciesFacts(userContext, taxon);
this.SwedishOccurrence = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, ArtDatabanken.Data.FactorId.SwedishOccurrence);
//this.SwedishHistory = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, FactorId.SwedishHistory);
}
catch (Exception)
{
this.SwedishOccurrence = "";
}
}
//base.SetTaxon(taxon);
//base.Author = taxon.Author;
//base.CommonName = taxon.CommonName;
//base.Id = taxon.Id;
//base.ScientificName = taxon.ScientificName;
//base.TaxonCategory = taxon.TaxonType.Name;
//base.TaxonCategoryId = taxon.TaxonType.Id;
//base.TaxonCategorySortOrder = taxon.TaxonType.SortOrder;
//base.TaxonId = taxon.Id.ToString();
//base.GUID = Resources.DyntaxaSettings.Default.LSIDString.Replace("[TaxonId]", taxon.Id.ToString());
}
//private static IPerson GetCreatedByPerson(IUserContext userContext, int createdBy)
//{
// IPerson person;
// IUser user;
// try
// {
// user = CoreData.UserManager.GetUser(userContext, createdBy);
// }
// catch (Exception)
// {
// // user does not exist in UserAdmin system
// user = null;
// }
// if ((user.IsNotNull()) &&
// (user.Type == UserType.Person) &&
// (user.PersonId.HasValue))
// {
// person = CoreData.UserManager.GetPerson(userContext, user.PersonId.Value);
// }
// else
// {
// person = null;
// }
// return person;
//}
/// <summary>
/// The create.
/// </summary>
/// <param name="userContext">
/// The user context.
/// </param>
/// <param name="taxon">
/// The taxon.
/// </param>
/// <param name="revisionId">
/// The revision id.
/// </param>
/// <returns>
/// The <see cref="TaxonSummaryViewModel"/>.
/// </returns>
public static TaxonSummaryViewModel Create(IUserContext userContext, ITaxon taxon, int?revisionId)
{
var model = new TaxonSummaryViewModel();
IPerson person;
bool isInRevision = DyntaxaHelper.IsInRevision(userContext, revisionId);
bool isUserTaxonEditor = userContext.IsTaxonEditor();
model.Id = taxon.Id.ToString();
model.Guid = taxon.Guid ?? string.Empty;
model.CategoryId = taxon.Category != null ? taxon.Category.Id : 0;
model.Category = taxon.Category != null ? taxon.Category.Name : string.Empty;
model.IsMicrospecies = taxon.IsMicrospecies;
model.CategorySortOrder = taxon.Category != null ? taxon.Category.SortOrder : 0;
model.ConceptDefinition = taxon.GetConceptDefinition(userContext) ?? "-";
model.AlertStatus = (TaxonAlertStatusId)taxon.AlertStatus.Id;
model.AlertImageUrl = GetAlertImageUrl(model.AlertStatus);
person = taxon.GetModifiedByPerson(userContext);
//IPerson createdByPerson = GetCreatedByPerson(userContext, taxon.CreatedBy);
//string createdFullName = createdByPerson.FullName;
if (person.IsNull())
{
model.UpdateInformation = string.Format("{0} ({1})", taxon.ModifiedDate.ToShortDateString(), String.Empty);
}
else
{
model.UpdateInformation = string.Format("{0} ({1})", taxon.ModifiedDate.ToShortDateString(), person.FullName);
}
model.ValidToInformation = string.Format("{0} ({1})", taxon.ValidToDate.ToShortDateString(), taxon.ModifiedByPerson);
model.CreatedInformation = string.Format("{0} ({1})", taxon.CreatedDate.ToShortDateString(), taxon.ModifiedByPerson);
model.Validity = GetValidityDescription(taxon);
if (taxon.ScientificName.IsNotEmpty())
{
model.ScientificName = new TaxonNameAuthorViewModel(taxon.ScientificName, taxon.Author);
}
if (taxon.CommonName.IsNotEmpty())
{
model.CommonName = new TaxonNameAuthorViewModel(taxon.CommonName, string.Empty);
}
// Synonyms
//model.Synonyms = new List<TaxonNameViewModel>();
//var synonyms = taxon.GetSynonyms(userContext, true);
//if (synonyms != null)
//{
// foreach (ITaxonName taxonName in synonyms)
// {
// model.Synonyms.Add(new TaxonNameViewModel(taxonName, taxon));
// }
//}
model.Synonyms = taxon.GetSynonymsViewModel(isInRevision, isUserTaxonEditor, false);
model.ProParteSynonyms = taxon.GetProParteSynonymsViewModel(isInRevision, isUserTaxonEditor);
model.MisappliedNames = taxon.GetMisappliedNamesViewModel(isInRevision, isUserTaxonEditor);
// Other valid common names
// todo - change implementation?
//model.OtherValidCommonNames = new List<string>();
//if (!taxon.CommonName.IsEmpty())
//{
// model.OtherValidCommonNames.AddRange(
// from taxonName in taxon.GetTaxonNames(userContext)
// where
// taxonName.Category.Id == (int)TaxonNameCategoryId.SwedishName &&
// taxonName.Version != taxon.GetCommonName(userContext).Version
// select taxonName.Name);
// // todo - även ha med att namnet är gilitigt. Hur ser man det???
//}
model.OtherValidCommonNames = taxon.GetNotRecommendedSwedishNamesViewModel(isInRevision, isUserTaxonEditor);
// Remove other valid common names from synonyms
if (model.OtherValidCommonNames.IsNotEmpty())
{
List <TaxonNameViewModel> newSynonymList = new List <TaxonNameViewModel>();
foreach (TaxonNameViewModel synonym in model.Synonyms)
{
if (model.OtherValidCommonNames.All(x => x.Id != synonym.Id))
{
newSynonymList.Add(synonym);
}
}
model.Synonyms = newSynonymList;
}
// Classification
var allParentTaxa = taxon.GetAllParentTaxonRelations(userContext, null, isInRevision, false, true);
var distinctParentTaxa = allParentTaxa.GroupBy(x => x.ParentTaxon.Id).Select(x => x.First().ParentTaxon).ToList();
model.Classification = new List <RelatedTaxonViewModel>();
foreach (ITaxon relatedTaxon in distinctParentTaxa)
{
if (relatedTaxon.Category.IsTaxonomic)
{
model.Classification.Add(new RelatedTaxonViewModel(relatedTaxon, relatedTaxon.Category, null));
}
}
// Species fact
try
{
// Dictionary<FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetSpeciesFacts(taxon, new [] {FactorId.SwedishOccurence, FactorId.SwedishHistory});
Dictionary <FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetCommonDyntaxaSpeciesFacts(userContext, taxon);
model.SwedishHistory = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, FactorId.SwedishHistory);
model.SwedishOccurrence = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, FactorId.SwedishOccurrence);
// If swedish occurrence or swedish history is changed in the current revision, then show those values instead.
if (DyntaxaHelper.IsInRevision(userContext, revisionId))
{
DyntaxaInternalTaxonServiceManager internalTaxonServiceManager =
new DyntaxaInternalTaxonServiceManager();
// Check if Swedish occurrence is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishOccurrenceRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
userContext,
(Int32)FactorId.SwedishOccurrence,
taxon.Id,
revisionId.Value);
if (swedishOccurrenceRevisionSpeciesFact != null)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(userContext, speciesFactModel.SwedishOccurrenceSpeciesFact, swedishOccurrenceRevisionSpeciesFact);
model.SwedishOccurrence = speciesFactModel.SwedishOccurrenceSpeciesFact.GetStatusOriginalLabel();
}
// Check if Swedish history is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishHistoryRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
userContext,
(Int32)FactorId.SwedishHistory,
taxon.Id,
revisionId.Value);
if (swedishHistoryRevisionSpeciesFact != null)
{
if (swedishHistoryRevisionSpeciesFact.StatusId.HasValue)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(userContext, speciesFactModel.SwedishHistorySpeciesFact, swedishHistoryRevisionSpeciesFact);
model.SwedishHistory = speciesFactModel.SwedishHistorySpeciesFact.GetStatusOriginalLabel();
}
else // swedish history is deleted in this revision
{
model.SwedishHistory = "";
}
}
}
}
catch (Exception)
{
// the taxon did not exist in Artfakta
}
return(model);
}
/// <summary>
/// Creates a swedish occurrence summary view model.
/// </summary>
/// <param name="taxon">The taxon.</param>
/// <returns></returns>
public SwedishOccurrenceSummaryViewModel CreateSwedishOccurrenceSummaryViewModel(ITaxon taxon)
{
var model = new SwedishOccurrenceSummaryViewModel();
int?redListValue = null;
// Species fact
try
{
Dictionary <ArtDatabanken.Data.FactorId, ArtDatabanken.Data.SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetCommonDyntaxaSpeciesFacts(this._userContext, taxon);
if (dicSpeciesFacts.ContainsKey(FactorId.SwedishHistory))
{
model.SwedishHistory = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, ArtDatabanken.Data.FactorId.SwedishHistory);
model.SwedishHistoryFact = dicSpeciesFacts[FactorId.SwedishHistory];
}
if (dicSpeciesFacts.ContainsKey(FactorId.SwedishOccurrence))
{
//CoreData.SpeciesFactManager.GetSpeciesFact()
model.SwedishOccurrence = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, ArtDatabanken.Data.FactorId.SwedishOccurrence);
model.SwedishOccurrenceFact = dicSpeciesFacts[FactorId.SwedishOccurrence];
}
if (dicSpeciesFacts.ContainsKey(FactorId.RedlistCategory))
{
model.RedListInfo = GetRedListCategory(dicSpeciesFacts[ArtDatabanken.Data.FactorId.RedlistCategory]);
redListValue = GetRedListCategoryValue(dicSpeciesFacts[ArtDatabanken.Data.FactorId.RedlistCategory]);
}
// If swedish occurrence or swedish history is changed in the current revision, then show those values instead.
if (DyntaxaHelper.IsInRevision(_userContext, _taxonRevision))
{
DyntaxaInternalTaxonServiceManager internalTaxonServiceManager =
new DyntaxaInternalTaxonServiceManager();
// Check if Swedish occurrence is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishOccurrenceRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
_userContext,
(Int32)FactorId.SwedishOccurrence,
taxon.Id,
_taxonRevision.Id);
if (swedishOccurrenceRevisionSpeciesFact != null)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, _userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(_userContext, speciesFactModel.SwedishOccurrenceSpeciesFact, swedishOccurrenceRevisionSpeciesFact);
model.SwedishOccurrence = speciesFactModel.SwedishOccurrenceSpeciesFact.GetStatusOriginalLabel();
model.SwedishOccurrenceFact = speciesFactModel.SwedishOccurrenceSpeciesFact;
}
// Check if Swedish history is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishHistoryRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
_userContext,
(Int32)FactorId.SwedishHistory,
taxon.Id,
_taxonRevision.Id);
if (swedishHistoryRevisionSpeciesFact != null)
{
if (swedishHistoryRevisionSpeciesFact.StatusId.HasValue)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, _userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(_userContext, speciesFactModel.SwedishHistorySpeciesFact, swedishHistoryRevisionSpeciesFact);
model.SwedishHistory = speciesFactModel.SwedishHistorySpeciesFact.GetStatusOriginalLabel();
model.SwedishHistoryFact = speciesFactModel.SwedishHistorySpeciesFact;
}
else // swedish history is deleted in this revision
{
model.SwedishHistory = null;
model.SwedishHistoryFact = null;
}
}
}
}
catch (Exception)
{
// the taxon did not exist in Artfakta
}
const int noRedListValue = 6;
if (!string.IsNullOrEmpty(model.RedListInfo) && redListValue.GetValueOrDefault(0) < noRedListValue)
{
var linkManager = new LinkManager();
string url = linkManager.GetUrlToRedlist(taxon.Id.ToString());
if (url != "")
{
var item = new LinkItem(
LinkType.Url,
LinkQuality.ApprovedByExpert,
Resources.DyntaxaResource.LinkToSwedishRedlistLabel,
url);
model.RedListLink = item;
}
}
return(model);
}
