public void TestProcessValidSingleMrnaSequenceWithThreeGenes()
{
string singleMrnaSequence = "auGgcA aa\nuUAGaaauuugggccckLUaa jcauuga";
List <string> codonsGen1 = new List <string> {
"auG", "gcA", "aau", "UAG"
};
SingleGene singleGene1 = new SingleGene(codonsGen1);
List <string> codonsGen2 = new List <string> {
"aaa", "uuu", "ggg", "ccc", "Uaa"
};
SingleGene singleGene2 = new SingleGene(codonsGen2);
List <string> codonsGen3 = new List <string> {
"cau", "uga"
};
SingleGene singleGene3 = new SingleGene(codonsGen3);
List <SingleGene> genesExpected = new List <SingleGene>();
genesExpected.Add(singleGene1);
genesExpected.Add(singleGene2);
genesExpected.Add(singleGene3);
List <SingleGene> genesCalculated = _mrnaSequenceParserHandler.ProcessMrnaSequence(singleMrnaSequence);
TestIfBothAreEqual(genesExpected, genesCalculated);
}
public void TestSingleGeneParserThreeCodonsAndInvalidNumberOfChars()
{
string mrnaSequence = "auGgcA aa\nucUAG";
List <string> codons = new List <string> {
"auG", "gcA", "aau", "cUA"
};
SingleGene singleGeneExpected = new SingleGene(codons);
SingleGene singleGeneCalculated = _singleGeneParserHandler.ResetCodonsListAndGetSingleGene(mrnaSequence);
CollectionAssert.AreEqual(singleGeneExpected._multipleCodons, singleGeneCalculated._multipleCodons);
}
public void TestSingleGeneParserFourCodonsAndValidNumberOfChars()
{
string mrnaSequence = "aaauuuggg ccckLUaa";
List <string> codons = new List <string> {
"aaa", "uuu", "ggg", "ccc", "Uaa"
};
SingleGene singleGeneExpected = new SingleGene(codons);
SingleGene singleGeneCalculated = _singleGeneParserHandler.ResetCodonsListAndGetSingleGene(mrnaSequence);
CollectionAssert.AreEqual(singleGeneExpected._multipleCodons, singleGeneCalculated._multipleCodons);
}
public void TestProcessValidSingleMrnaSequenceWithOneGene()
{
string singleMrnaSequence = "auGgcA aa\nuUAG";
List <string> codons = new List <string> {
"auG", "gcA", "aau", "UAG"
};
SingleGene singleGene = new SingleGene(codons);
List <SingleGene> genesExpected = new List <SingleGene>();
genesExpected.Add(singleGene);
List <SingleGene> genesCalculated = _mrnaSequenceParserHandler.ProcessMrnaSequence(singleMrnaSequence);
TestIfBothAreEqual(genesExpected, genesCalculated);
}
private void TestIfBothAreEqual(List <SingleGene> genesExpected,
List <SingleGene> genesCalculated)
{
int numberOfGenesCalculated = genesCalculated.Count;
int numberOfGenesExpected = genesExpected.Count;
if ((numberOfGenesCalculated > 0) && (numberOfGenesExpected > 0))
{
for (int i = 0; (i < numberOfGenesCalculated) && (i < numberOfGenesExpected); i++)
{
SingleGene geneCalculated = genesCalculated[i];
SingleGene geneExpected = genesExpected[i];
CollectionAssert.AreEqual(geneExpected._multipleCodons, geneCalculated._multipleCodons);
}
}
else
{
Assert.AreEqual(numberOfGenesExpected, numberOfGenesCalculated);
}
}
