private static void MyEngine_startingSingleEngineHander(object sender, SingleEngineEventArgs e)
{
if (InProgress)
{
MyWriter.WriteLine();
}
InProgress = false;
WriteMultiLineIndented("Starting engine: " + e.MyEngine.GetType().Name + " " + e.MyEngine.GetId());
MyWriter.Indent++;
}
public static void SingleEventArgsTest()
{
Protein parentProteinForMatch = new Protein("MEK", null);
CommonParameters commonParameters = new CommonParameters(digestionParams: new DigestionParams(minPeptideLength: 1));
var fsp = new List <(string fileName, CommonParameters fileSpecificParameters)>();
fsp.Add(("", commonParameters));
ModificationMotif.TryGetMotif("E", out ModificationMotif motif);
List <Modification> variableModifications = new List <Modification> {
new Modification(_originalId: "21", _target: motif, _locationRestriction: "Anywhere.", _monoisotopicMass: 21.981943)
};
List <PeptideWithSetModifications> allPeptidesWithSetModifications = parentProteinForMatch.Digest(commonParameters.DigestionParams, new List <Modification>(), variableModifications).ToList();
Assert.AreEqual(4, allPeptidesWithSetModifications.Count());
PeptideWithSetModifications ps = allPeptidesWithSetModifications.First();
PeptideWithSetModifications pepWithSetModsForSpectrum = allPeptidesWithSetModifications[1];
MsDataFile myMsDataFile = new TestDataFile(new List <PeptideWithSetModifications> {
pepWithSetModsForSpectrum
});
Tolerance fragmentTolerance = new AbsoluteTolerance(0.01);
Ms2ScanWithSpecificMass scan = new Ms2ScanWithSpecificMass(myMsDataFile.GetAllScansList().Last(), pepWithSetModsForSpectrum.MonoisotopicMass.ToMz(1), 1, null, new CommonParameters());
var theoreticalProducts = new List <Product>();
ps.Fragment(DissociationType.HCD, FragmentationTerminus.Both, theoreticalProducts);
var matchedIons = MetaMorpheusEngine.MatchFragmentIons(scan, theoreticalProducts, new CommonParameters());
PeptideSpectralMatch newPsm = new PeptideSpectralMatch(ps, 0, 0, 2, scan, commonParameters, matchedIons);
LocalizationEngine f = new LocalizationEngine(new List <PeptideSpectralMatch> {
newPsm
}, myMsDataFile, new CommonParameters(), fsp, new List <string>());
var singleEngine = new SingleEngineEventArgs(f);
Assert.That(singleEngine.MyEngine.Equals(f));
var singleFile = new SingleFileEventArgs("", new List <string>());
Assert.That(singleFile.WrittenFile.Equals(""));
var stringList = new StringListEventArgs(new List <string>());
var rr = (stringList.StringList.DefaultIfEmpty().First());
Assert.That(stringList.StringList.DefaultIfEmpty().First() == null);
}
private static void MyEngine_startingSingleEngineHander(object sender, SingleEngineEventArgs e)
{
if (InProgress)
{
if (CommandLineSettings.Verbosity == CommandLineSettings.VerbosityType.normal)
{
MyWriter.WriteLine();
}
}
InProgress = false;
if (CommandLineSettings.Verbosity == CommandLineSettings.VerbosityType.normal)
{
WriteMultiLineIndented("Starting engine: " + e.MyEngine.GetType().Name + " " + e.MyEngine.GetId());
MyWriter.Indent++;
}
}
