void bw_DoWork(object sender, DoWorkEventArgs e)
{
var bw = (BackgroundWorker)sender;
try
{
//This mode was requested by Julia Laskin.
//This mode detects peaks in each dataset and merges the output
if (_parameters.ScanBasedWorkflowParameters.ScanBasedWorkflowName.ToLower() == "run_merging_with_peak_export")
{
var workflow = new RunMergingPeakExportingWorkflow(_parameters, _inputFileList, _outputPath, bw);
workflow.Execute();
}
else
{
foreach (var file in _inputFileList)
{
_currentFile = file;
var workflow = ScanBasedWorkflow.CreateWorkflow(file, _parameterFileName, _outputPath, bw);
workflow.Execute();
}
}
}
catch (COMException ex)
{
// bool isFile = RunUtilities.RunIsFileOrFolder(_currentFile);
var errorMessage =
"A 'COMException' has occurred. This can happen when the vendor library has not been installed.\n\n";
errorMessage +=
"If you are trying to read Thermo .raw files, please install Thermo's MSFileReader library. ";
errorMessage += "To do so, Google 'thermo msfilereader' and you should find it. If not, contact us.\n\n";
errorMessage += "Full error details below:\n";
errorMessage += ex.Message;
MessageBox.Show(errorMessage, "COMError occurred");
}
catch (Exception ex)
{
MessageBox.Show(ex.Message + Environment.NewLine + Environment.NewLine + "**NOTE: see log file for additional details.");
}
if (bw.CancellationPending)
{
e.Cancel = true;
}
}
public void Test1()
{
var parameters = new DeconToolsParameters();
var datasetList = new List <string>();
datasetList.Add(@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\JuliaLaskinRunMergingWorkflow\b-LSOA_HPLC_ESIbox_pos_res60k_RT92-98.raw");
datasetList.Add(@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\JuliaLaskinRunMergingWorkflow\b-LSOA_HPLC_ESIbox_pos_res60k_RT1255-1282.raw");
datasetList.Add(@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\JuliaLaskinRunMergingWorkflow\b-LSOA_HPLC_ESIbox_pos_res60k_RT1400-1500.raw");
var workflow = new RunMergingPeakExportingWorkflow(parameters, datasetList);
workflow.Execute();
}