private static Tuple <int[, ], int[]> GetMatrixAndTriangle2(string[] lines)
{
List <string> dbn1s = new List <string>();
List <string> dbn2s = new List <string>();
for (int i = 0; i < lines.Length; i++)
{
for (int j = i + 1; j < lines.Length; j++)
{
dbn1s.Add(lines[i]);
dbn2s.Add(lines[j]);
}
}
int[] upperTriangle = RnaDistance.Distance(dbn1s.ToArray(), dbn2s.ToArray());
int[,] matrix = new int[lines.Length, lines.Length];
int index = 0;
for (int i = 0; i < lines.Length; i++)
{
for (int j = i + 1; j < lines.Length; j++)
{
matrix[i, j] = upperTriangle[index];
matrix[j, i] = upperTriangle[index];
index++;
}
}
return(new Tuple <int[, ], int[]>(matrix, upperTriangle));
}
public void DistTest3()
{
string dbn1 = "(((.((.(((((((((((.((......))..)))))))..))))..)).)))..(((((....)))))...";
string dbn2 = ".(((((....))))).(((((....)))))..((((..((((...((((((...))))))...))))))))";
int expected = 64;
int actual = RnaDistance.Distance(dbn1, dbn2);
Assert.AreEqual(expected, actual);
}
private static Tuple <int[, ], int[]> GetMatrixAndTriangle(string[] lines)
{
int[,] matrix = new int[lines.Length, lines.Length];
List <int> triangle = new List <int>();
for (int i = 0; i < lines.Length; i++)
{
int[] ds = RnaDistance.Distance(lines[i], lines.Skip(i + 1).ToArray());
for (int j = i + 1; j < lines.Length; j++)
{
int d = ds[j - i - 1];
matrix[i, j] = d;
matrix[j, i] = d;
triangle.Add(d);
}
}
return(new Tuple <int[, ], int[]>(matrix, triangle.ToArray()));
}