public void DocLoadLibrary()
{
// Load the document
var testFilesDir = new TestFilesDir(TestContext, TEST_ZIP_PATH);
string loadPath = testFilesDir.GetTestPath("DocWithLibrary.sky");
string libraryPath = testFilesDir.GetTestPath("Yeast_MRMer_min.blib");
var doc = ResultsUtil.DeserializeDocument(loadPath);
doc = doc.ChangeSettings(doc.Settings.ChangePeptideLibraries(
lib => lib.ChangeLibrarySpecs(new[] { new BiblioSpecLiteSpec(lib.Libraries[0].Name, libraryPath), })));
// Cause library load and subsequent document update
using (var docContainer = new ResultsTestDocumentContainer(null, loadPath))
{
docContainer.SetDocument(doc, null, true);
docContainer.WaitForProcessing();
docContainer.AssertComplete();
// Check that library info on peptides and transitions were not recalculated
// during document load
var docLoaded = docContainer.Document;
Assert.AreEqual(6, docLoaded.PeptideCount);
Assert.AreEqual(36, docLoaded.PeptideTransitionCount);
var transitions = docLoaded.PeptideTransitions.ToArray();
Assert.AreEqual("y12", transitions[0].FragmentIonName);
Assert.AreEqual(1, transitions[0].LibInfo.Rank);
Assert.AreEqual("y12", transitions[3].FragmentIonName);
Assert.AreEqual(1, transitions[3].LibInfo.Rank);
Assert.AreEqual("b3", transitions[14].FragmentIonName);
Assert.AreEqual(2, transitions[14].LibInfo.Rank);
Assert.AreEqual("b3", transitions[17].FragmentIonName);
Assert.AreEqual(2, transitions[17].LibInfo.Rank);
var docLibraryChanged = docLoaded.ChangeSettings(docLoaded.Settings.ChangePeptideLibraries(
lib => lib.ChangeLibraries(new LibrarySpec[0], new Library[0])
.ChangeLibrarySpecs(new[] { new BiblioSpecLiteSpec("Test reload", libraryPath), })));
docContainer.SetDocument(docLibraryChanged, docLoaded, true);
var docChangedLoaded = docContainer.Document;
// Check that document changed to be in synch with the library
Assert.AreEqual(3, docChangedLoaded.PeptideCount);
Assert.AreEqual(18, docChangedLoaded.PeptideTransitionCount);
var transitionsNew = docChangedLoaded.PeptideTransitions.ToArray();
Assert.AreEqual("y7", transitionsNew[0].FragmentIonName);
Assert.AreEqual(1, transitionsNew[0].LibInfo.Rank);
Assert.AreEqual("y7", transitionsNew[3].FragmentIonName);
Assert.AreEqual(1, transitionsNew[3].LibInfo.Rank);
Assert.AreEqual("y6", transitionsNew[8].FragmentIonName);
Assert.AreEqual(2, transitionsNew[8].LibInfo.Rank);
Assert.AreEqual("y6", transitionsNew[11].FragmentIonName);
Assert.AreEqual(2, transitionsNew[11].LibInfo.Rank);
for (int i = 1; i < 3; i++)
{
Assert.AreSame(transitions[i], transitionsNew[i]);
Assert.AreSame(transitions[i + 3], transitionsNew[i + 3]);
}
for (int i = 12; i < 14; i++)
{
Assert.AreSame(transitions[i], transitionsNew[i - 6]);
Assert.AreSame(transitions[i + 3], transitionsNew[i - 3]);
}
for (int i = 24; i < 27; i++)
{
Assert.AreSame(transitions[i], transitionsNew[i - 12]);
Assert.AreSame(transitions[i + 3], transitionsNew[i - 9]);
}
}
PeakAnnotationsTest();
}