public IAsyncOperation <ColorFrameReader> OpenColorFrameReaderAsync(ReaderConfig config = ReaderConfig.Default)
{
return(Task.Run(async() =>
{
if (ColorReader == null)
{
if (Type == SensorType.NetworkClient)
{
ColorReader = new ColorFrameReader(this, _networkClient, config);
}
else
{
var colorSourceInfo = _sourceGroup.SourceInfos.FirstOrDefault(si => si.SourceKind == MediaFrameSourceKind.Color);
if (colorSourceInfo != null)
{
MediaFrameSource colorSource;
if (_mediaCapture.FrameSources.TryGetValue(colorSourceInfo.Id, out colorSource))
{
var colorMediaReader = await _mediaCapture.CreateFrameReaderAsync(colorSource);
ColorReader = new ColorFrameReader(this, colorMediaReader, config);
}
}
}
}
await ColorReader?.OpenAsync();
return ColorReader;
}).AsAsyncOperation());
}
public MainForm()
{
InitializeComponent();
this.thesisRecordBindingSource.Add(MainThread.getInstance().ThesisRecord);
this.viewModelBindingSource.Add(ViewModel.getInstance());
this.readerConfigBindingSource.Add(ReaderConfig.getInstance());
this.inventoryRecordBindingSource.Add(InventoryStore.getInstance().SelectedInventoryRecord);
this.fileSelectListBox.DataSource = DiscContents.getInstance().MaskedFileInfoList;
this.fileSelectListBox.DisplayMember = "MaskedFileName";
this.allFileListBox.DataSource = DiscContents.getInstance().DisplayFileInfoList;
this.allFileListBox.DisplayMember = "DisplayFileName";
this.inventoryMatchesComboBox.DataSource = MainThread.getInstance().MatchingInventoryList;
this.inventoryMatchesComboBox.DisplayMember = "DisplayString";
ViewModel.getInstance().ProgressBar = this.progressBar;
PdfReaderHelper.getInstance().ContainerPanel = this.pdfReaderPanel;
Version version = Assembly.GetExecutingAssembly().GetName().Version;
this.Text = Text + " - v" + version.Major + "." + version.Minor + "." + version.Build;
this.chineseAbstractTextBox.KeepLineBreaks = true;
this.englishAbstractTextBox.KeepLineBreaks = true;
this.menuPanel.DataBindings.Add(new Binding("Visible", this.viewModelBindingSource, "ShowMenu", true, DataSourceUpdateMode.OnPropertyChanged));
this.pdfTextsTextArea.DataBindings.Add(new Binding("Visible", this.viewModelBindingSource, "ShowPdfTexts", true, DataSourceUpdateMode.OnPropertyChanged));
}
public static void CopyContentToStaging()
{
CleanUpStaging();
long totalFileSize = DiscContents.getInstance().TotalFileSize;
long copiedFileSize = 0;
string sourceDirectory = ReaderConfig.getInstance().ContentPath;
if (!sourceDirectory.EndsWith(@"\"))
{
sourceDirectory += @"\";
}
foreach (FileInfo fileInfo in DiscContents.getInstance().FileInfoList)
{
string fileName = fileInfo.Name;
string targetFileDirectory = DEFAULT_STAGING_DIRECTORY + fileInfo.FullName.Substring(sourceDirectory.Length);
targetFileDirectory = targetFileDirectory.Substring(0, targetFileDirectory.Length - fileName.Length);
if (!targetFileDirectory.EndsWith(@"\"))
{
targetFileDirectory += @"\";
}
if (!Directory.Exists(targetFileDirectory))
{
Directory.CreateDirectory(targetFileDirectory);
}
File.Copy(fileInfo.FullName, targetFileDirectory + fileName);
copiedFileSize += fileInfo.Length;
ViewModel.getInstance().ProgressPercentage = copiedFileSize * 100 / totalFileSize;
}
}
public OpenReader(ReaderType readerType, ReaderConfig config)
{
Type = readerType;
Config = config;
Status = OperationStatus.Request;
_signal = new ManualResetEvent(false);
}
public void save()
{
ViewModel.getInstance().ProgressBarColor = Color.Green;
ViewModel.getInstance().ProgressBar.Maximum = 100;
ThesisRecord record = MainThread.getInstance().ThesisRecord;
if (!validateInput(record))
{
return;
}
ViewModel.getInstance().AllowInput(false);
ViewModel.getInstance().MenuButtonEnabled = false;
record.RecordId = DBEtdRecords.generateRecordId();
record.FilePath = record.RecordId + ".zip";
record.FullTextFilePath = record.RecordId + ".pdf";
string storageFolderPath = ReaderConfig.getInstance().StoragePath;
if (!storageFolderPath.EndsWith(@"\"))
{
storageFolderPath += @"\";
}
record.StorageFolderPath = storageFolderPath;
FileUtils.CopyZipToStorage();
}
private SourceInfo[] getSourceInfo(FileInfo fileInfo, bool getDetails)
{
var sourceInfoList = new List <SourceInfo>();
sourceInfoList.Add(new SourceInfo());
sourceInfoList[0].type = getSourceType(fileInfo);
sourceInfoList[0].name = fileInfo.Name;
sourceInfoList[0].hasDetails = getDetails;
sourceInfoList[0].size = (UInt64)fileInfo.Length;
sourceInfoList[0].dateModified = fileInfo.LastWriteTime;
if (sourceInfoList[0].type != String.Empty)
{
if (!getDetails)
{
return(sourceInfoList.ToArray());
}
try
{
ReaderList readerList = ReaderList.FullReaderList;
var readerConfig = new ReaderConfig
{
simAsSpectra = Properties.Settings.Default.SimAsSpectra,
srmAsSpectra = Properties.Settings.Default.SrmAsSpectra,
combineIonMobilitySpectra = Properties.Settings.Default.CombineIonMobilitySpectra,
ignoreZeroIntensityPoints = Properties.Settings.Default.IgnoreZeroIntensityPoints,
acceptZeroLengthSpectra = Properties.Settings.Default.AcceptZeroLengthSpectra,
allowMsMsWithoutPrecursor = false
};
MSDataList msInfo = new MSDataList();
readerList.read(fileInfo.FullName, msInfo, readerConfig);
foreach (MSData msData in msInfo)
{
SourceInfo sourceInfo = new SourceInfo();
sourceInfo.type = sourceInfoList[0].type;
sourceInfo.name = sourceInfoList[0].name;
if (msInfo.Count > 1)
{
sourceInfo.name += " (" + msData.run.id + ")";
}
sourceInfo.populateFromMSData(msData);
sourceInfoList.Add(sourceInfo);
}
} catch
{
sourceInfoList[0].spectra = 0;
sourceInfoList[0].type = "Invalid " + sourceInfoList[0].type;
}
foreach (SourceInfo sourceInfo in sourceInfoList)
{
sourceInfo.size = (UInt64)fileInfo.Length;
sourceInfo.dateModified = fileInfo.LastWriteTime;
}
return(sourceInfoList.ToArray());
}
return(null);
}
public IAsyncOperation <ColorFrameReader> OpenColorFrameReaderAsync(ReaderConfig config = ReaderConfig.Default)
{
return(Task.Run(async() =>
{
if (_colorReader == null)
{
var colorSourceInfo = _sourceGroup.SourceInfos.FirstOrDefault(si => si.SourceKind == MediaFrameSourceKind.Color);
if (colorSourceInfo == null)
{
return null;
}
MediaFrameSource colorSource;
if (_mediaCapture.FrameSources.TryGetValue(colorSourceInfo.Id, out colorSource))
{
var colorMediaReader = await _mediaCapture.CreateFrameReaderAsync(colorSource);
_colorReader = new ColorFrameReader(this, colorMediaReader, config);
}
else
{
return null;
}
}
await _colorReader.OpenAsync();
return _colorReader;
}).AsAsyncOperation());
}
internal ColorFrameReader(Sensor sensor, MediaFrameReader colorReader, ReaderConfig config)
{
Sensor = sensor;
ReaderConfiguration = config;
_colorReader = colorReader;
}
public static void WriteLog(Action <Exception> action, string[] prms)
{
RFIDServiceClient client = null;
try
{
string remoteAddress = ReaderConfig.BuildUrl();
EndpointAddress endpoint = new EndpointAddress(remoteAddress);
BasicHttpBinding binding = new BasicHttpBinding(BasicHttpSecurityMode.None);
//binding.Security = BasicHttpSecurityMode.Transport;
binding.OpenTimeout = new TimeSpan(0, 0, 10);
binding.CloseTimeout = new TimeSpan(0, 0, 10);
binding.SendTimeout = new TimeSpan(0, 0, 10);
binding.ReceiveTimeout = new TimeSpan(0, 0, 10);
binding.MaxReceivedMessageSize = int.MaxValue;
binding.MaxBufferPoolSize = int.MaxValue;
binding.MaxBufferSize = int.MaxValue;
client = new RFIDServiceClient(binding, endpoint);
client.WriteLog(prms);
action(null);
}
catch (Exception e)
{
action(e);
}
}
private void button1_Click(object sender, EventArgs e)
{
Regex rx = new Regex(@"^((?:(?:25[0-5]|2[0-4]\d|((1\d{2})|([1-9]?\d)))\.){3}(?:25[0-5]|2[0-4]\d|((1\d{2})|([1-9]?\d))))$");
if (!rx.IsMatch(txtServerIP.Text))
{
MessageBox.Show("服务器IP地址格式不合法。", "输入错误");
txtServerIP.SelectAll();
txtServerIP.Focus();
return;
}
//int port = -1;
try
{
int.Parse(txtPort.Text);
}
catch
{
MessageBox.Show("端口地址范围为0~65535。", "输入错误");
txtPort.SelectAll();
txtPort.Focus();
return;
}
ReaderConfig.SaveConfig(txtServerIP.Text, txtPort.Text);
this.DialogResult = DialogResult.OK;
}
public SpectrumSource(string filepath)
{
MSDataList msdList = new MSDataList();
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
ReaderList.FullReaderList.read(filepath, msdList, readerConfig);
msDataFile = msdList[0];
//msDataFile = new MSDataFile(filepath);
sourceFilepath = filepath;
// create dummy spectrum/chromatogram list to simplify logic
msDataFile.run.spectrumList = msDataFile.run.spectrumList ?? new SpectrumListSimple();
msDataFile.run.chromatogramList = msDataFile.run.chromatogramList ?? new ChromatogramListSimple();
setInputFileWaitHandle = new EventWaitHandle(false, EventResetMode.ManualReset);
/*setInputFileDelegate = new ParameterizedThreadStart( startSetInputFile );
* Thread setInputFileThread = new Thread( setInputFileDelegate );
*
* setInputFileThread.Start( (object) filepath );*/
}
protected bool initStorage()
{
String dbPath = ReaderConfig.getInstance().DBPath.Trim();
String storagePath = ReaderConfig.getInstance().StoragePath.Trim();
if (dbPath == null || dbPath.Equals("") || !File.Exists(dbPath))
{
return(false);
}
if (storagePath == null || storagePath.Equals("") || !Directory.Exists(storagePath))
{
return(false);
}
InventoryStore inventoryStore = InventoryStore.getInstance();
if (inventoryStore.InventoryDataTable == null || inventoryStore.InventoryDataTable.Rows.Count <= 0)
{
try
{
inventoryStore.InventoryDataTable = DBInventoryRecords.listInventoryItems();
if (inventoryStore.InventoryDataTable.Rows.Count <= 0)
{
return(false);
}
}
catch (Exception e)
{
MessageBox.Show(e.Message);
return(false);
}
}
return(true);
}
public SpectrumSource(string filepath)
{
MSDataList msdList = new MSDataList();
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
if (!File.Exists(filepath) && !Directory.Exists(filepath)) // Some mass spec "files" are really directory structures
{
throw new FileNotFoundException("Filepath not found: " + filepath, filepath);
}
ReaderList.FullReaderList.read(filepath, msdList, readerConfig);
msDataFile = msdList[0];
//msDataFile = new MSDataFile(filepath);
sourceFilepath = filepath;
// create dummy spectrum/chromatogram list to simplify logic
msDataFile.run.spectrumList = msDataFile.run.spectrumList ?? new SpectrumListSimple();
msDataFile.run.chromatogramList = msDataFile.run.chromatogramList ?? new ChromatogramListSimple();
setInputFileWaitHandle = new EventWaitHandle(false, EventResetMode.ManualReset);
/*setInputFileDelegate = new ParameterizedThreadStart( startSetInputFile );
* Thread setInputFileThread = new Thread( setInputFileDelegate );
*
* setInputFileThread.Start( (object) filepath );*/
}
public static IVideoIndexer CreateInstance(VideoIndexerConfig config, ReaderConfig readerConfig, ILog logger)
{
if (config == null)
{
throw new NullReferenceException();
}
return(new VideoIndexerService(config, readerConfig, logger));
}
public static IVideoIndexer <T> CreateInstance(VideoIndexerConfig config, ReaderConfig readerConfig, ILog logger)
{
if (config == null)
{
return(null);
}
return(new VideoIndexerService <T>(config, readerConfig, logger));
}
private SourceInfo[] getSourceInfo(FileInfo fileInfo, bool getDetails)
{
var sourceInfoList = new List <SourceInfo>();
sourceInfoList.Add(new SourceInfo());
sourceInfoList[0].type = getSourceType(fileInfo);
sourceInfoList[0].name = fileInfo.Name;
sourceInfoList[0].hasDetails = getDetails;
sourceInfoList[0].size = (UInt64)fileInfo.Length;
sourceInfoList[0].dateModified = fileInfo.LastWriteTime;
if (sourceInfoList[0].type != String.Empty)
{
if (!getDetails)
{
return(sourceInfoList.ToArray());
}
try
{
ReaderList readerList = ReaderList.FullReaderList;
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
MSDataList msInfo = new MSDataList();
readerList.read(fileInfo.FullName, msInfo, readerConfig);
foreach (MSData msData in msInfo)
{
SourceInfo sourceInfo = new SourceInfo();
sourceInfo.type = sourceInfoList[0].type;
sourceInfo.name = sourceInfoList[0].name;
if (msInfo.Count > 1)
{
sourceInfo.name += " (" + msData.run.id + ")";
}
sourceInfo.populateFromMSData(msData);
sourceInfoList.Add(sourceInfo);
}
} catch
{
sourceInfoList[0].spectra = 0;
sourceInfoList[0].type = "Invalid " + sourceInfoList[0].type;
}
foreach (SourceInfo sourceInfo in sourceInfoList)
{
sourceInfo.size = (UInt64)fileInfo.Length;
sourceInfo.dateModified = fileInfo.LastWriteTime;
}
return(sourceInfoList.ToArray());
}
return(null);
}
public Config(string outputPath)
{
OutputPath = outputPath;
Filenames = new List <string>();
Filters = new List <string>();
Extension = string.Empty;
ContactFilename = string.Empty;
WriteConfig = new MSDataFile.WriteConfig();
ReaderConfig = new ReaderConfig();
}
public FileStreamInsightsReaderService(ReaderConfig config, ILog logger)
{
if (config == null || logger == null)
{
throw new NullReferenceException();
}
_config = config;
_logger = logger;
}
protected static SQLiteConnection getConnection()
{
string dbFilePath = ReaderConfig.getInstance().DBPath;
if (dbFilePath != null && File.Exists(dbFilePath))
{
return(new SQLiteConnection(@"Data Source=" + dbFilePath + @";Version=3;", true));
}
return(null);
}
private void button4_Click(object sender, EventArgs e)
{
try
{
ReaderConfig.ReleaseReader();
}
catch (Exception)
{
}
Application.Exit();
}
public void setReaderConfig(ReaderConfig config)
{
readerconfig.attenuation = config.attenuation;
readerconfig.modeIndex = config.modeIndex;
readerconfig.tagPopulation = config.tagPopulation;
readerconfig.tagTransitTime = config.tagTransitTime;
readerconfig.antennaID = config.antennaID;
readerconfig.readerSensitivity = config.readerSensitivity;
readerconfig.channelIndex = config.channelIndex;
readerconfig.hopTableIndex = config.hopTableIndex;
readerconfig.periodicTriggerValue = config.periodicTriggerValue;
}
public MainForm()
{
InitializeComponent();
try
{
ReaderConfig.InitRfidReader();
}
catch (Exception)
{
throw;
}
}
public AzureBlobInsightsReaderService(ReaderConfig config, ILog logger, string thumbnailImageLocation)
{
if (config == null || logger == null)
{
throw new NullReferenceException();
}
_config = config;
_logger = logger;
_blobServiceClient = new BlobServiceClient(_config.AzureBlob.ConnectionString);
_insightsContainerClient = _blobServiceClient.GetBlobContainerClient(_config.AzureBlob.InsightsContainer);
_insightsContainerClient.CreateIfNotExists();
_failedInsightsContainerClient = _blobServiceClient.GetBlobContainerClient(_config.AzureBlob.FailedInsightsContainer);
_failedInsightsContainerClient.CreateIfNotExists();
_thumbnailImageLocation = thumbnailImageLocation;
}
public VideoIndexerService(VideoIndexerConfig config, ReaderConfig readerConfig, ILog logger)
{
if (config == null || readerConfig == null || logger == null)
{
throw new NullReferenceException();
}
_config = config;
_readerConfig = readerConfig;
_logger = logger;
if (string.IsNullOrEmpty(_config.AccessToken))
{
_accountAccessToken = GetAccountAccessTokenAsync().GetAwaiter().GetResult();
_accountAccessTokenTimeStamp = DateTime.UtcNow;
}
}
public static void GetModuleInfo(Action <ModuleInfo, Exception> action, string[] prms)
{
RFIDServiceClient client = null;
try
{
string remoteAddress = ReaderConfig.BuildUrl();
EndpointAddress endpoint = new EndpointAddress(remoteAddress);
BasicHttpBinding binding = new BasicHttpBinding(BasicHttpSecurityMode.None);
//binding.Security = BasicHttpSecurityMode.Transport;
binding.OpenTimeout = new TimeSpan(0, 0, 10);
binding.CloseTimeout = new TimeSpan(0, 0, 10);
binding.SendTimeout = new TimeSpan(0, 0, 10);
binding.ReceiveTimeout = new TimeSpan(0, 0, 10);
binding.MaxReceivedMessageSize = int.MaxValue;
binding.MaxBufferPoolSize = int.MaxValue;
binding.MaxBufferSize = int.MaxValue;
client = new RFIDServiceClient(binding, endpoint);
//client = new RFIDServiceClient();
action(client.getModuleInfo(prms), null);
//client.Close();
}
catch (Exception ex)
{
//client.Abort();
action(null, ex);
}
//finally
//{
// ICommunicationObject comObj = ((ICommunicationObject)client);
// if (comObj.State == CommunicationState.Faulted)
// {
// comObj.Abort();
// }
// else
// {
// comObj.Close();
// }
//}
}
public IReader GetReader(string path)
{
IReader reader = null;
if (_readersDic.ContainsKey(path))
{
reader = _readersDic[path];
}
else
{
reader = ReaderConfig.GetReader(path);
LoadMgr.Single.LoadConfig(path, (data) => reader.SetData(data));
_readersDic[path] = reader;
}
return(reader);
}
public string ocrPDFTexts(string pdfFileName)
{
string ghostScriptPath = ReaderConfig.getInstance().GhostscriptPath;
if (ghostScriptPath == null || "".Equals(ghostScriptPath) || !File.Exists(ghostScriptPath))
{
alert("Invalid Ghostscript Path: " + ghostScriptPath, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return(null);
}
string tesseractPath = ReaderConfig.getInstance().TesseractPath;
if (tesseractPath == null || "".Equals(tesseractPath) || !File.Exists(tesseractPath))
{
alert("Invalid Tesseeract Path: " + tesseractPath, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return(null);
}
string ghostScriptParam = "-q -dNOPAUSE -dFirstPage=1 -dLastPage=1 -sDEVICE=tifflzw -r300 -sOutputFile=temp.tif " + "\"" + pdfFileName + "\"" + " -c quit";
CmdHelper.run(ghostScriptPath, ghostScriptParam);
if (!File.Exists(@"temp.tif"))
{
alert("Error converting pdf to tiff", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return(null);
}
string tesseractParam = "temp.tif tsrout";
CmdHelper.run(tesseractPath, tesseractParam);
if (!File.Exists(@"tsrout.txt"))
{
alert("Error reading ocr output", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return(null);
}
string parseResult = File.ReadAllText(@"tsrout.txt");
File.Delete(@"temp.tif");
File.Delete(@"tsrout.txt");
return(parseResult);
}
public static IInsightsReader <T> CreateInstance(ReaderConfig readerConfig, WriterConfig writerConfig, ILog logger)
{
if (readerConfig == null)
{
throw new NullReferenceException();
}
if (writerConfig == null)
{
throw new NullReferenceException();
}
if (readerConfig.Type == "AzureBlob")
{
// If it is a AzureBlob type, it will add the Uri of the image as a property
var thumbnailImageLocation = writerConfig.AzureBlob.ThumbnailsContainer;
return(new AzureBlobInsightsReaderService <T, T_Parser>(readerConfig, logger, thumbnailImageLocation));
}
return(new FileStreamInsightsReaderService <T, T_Parser>(readerConfig, logger));
}
static void Main(string[] args)
{
runOnce(); // Setup application icon for "Add remove programs"
Application.ApplicationExit += new EventHandler(OnApplicationExit);
Application.EnableVisualStyles();
Application.SetCompatibleTextRenderingDefault(false);
if (args.Length > 1 && "reset".Equals(args[0]))
{
ReaderConfig config = ReaderConfig.getInstance();
config.ContentPath = args[1];
config.PythonPath = @"lib\WinPython\python\python.exe";
config.PdfminerPath = @"lib\WinPython\python\Scripts\pdf2txt.py";
config.UseAdobeReader = true;
config.EnableOCR = false;
config.GhostscriptPath = @"lib\Ghostscript\bin\gswin32.exe";
config.TesseractPath = @"lib\Tesseract-ocr\tesseract.exe";
config.DBPath = @"Y:\rsdiconversion\db\ethesis2016.db3";
config.StoragePath = @"Y:\rsdiconversion\contents";
config.SaveSettings();
}
Form mainForm = new MainForm();
// Initialize PDF viewer component
PdfReaderHelper.getInstance().init(ReaderConfig.getInstance().UseAdobeReader);
// Map network drive
DriveHelper.connectStorageDrive();
// Start file monitor thread
Thread readCDThread = new Thread(new ThreadStart(m.start));
readCDThread.SetApartmentState(ApartmentState.STA);
readCDThread.Start();
Application.Run(mainForm);
}
public IReader GetReader(string path)
{
IReader reader = null;
if (_readersDic.ContainsKey(path))
{
reader = _readersDic[path];
}
else
{
//从当前的配置中，获取一个新的reader
reader = ReaderConfig.GetReader(path);
if (reader != null)
{
//读取当前路径配置数据，赋值给reader
_readersDic[path] = reader;
}
else
{
Debug.LogError("未获取到对应的reader,路径：" + path);
}
}
return(reader);
}
private SourceInfo[] getSourceInfo( FileInfo fileInfo, bool getDetails )
{
var sourceInfoList = new List<SourceInfo>();
sourceInfoList.Add( new SourceInfo() );
sourceInfoList[0].type = getSourceType( fileInfo );
sourceInfoList[0].name = fileInfo.Name;
sourceInfoList[0].hasDetails = getDetails;
sourceInfoList[0].size = (UInt64) fileInfo.Length;
sourceInfoList[0].dateModified = fileInfo.LastWriteTime;
if( sourceInfoList[0].type != String.Empty )
{
if( !getDetails )
return sourceInfoList.ToArray();
try
{
ReaderList readerList = ReaderList.FullReaderList;
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
MSDataList msInfo = new MSDataList();
readerList.read( fileInfo.FullName, msInfo, readerConfig );
foreach( MSData msData in msInfo )
{
SourceInfo sourceInfo = new SourceInfo();
sourceInfo.type = sourceInfoList[0].type;
sourceInfo.name = sourceInfoList[0].name;
if( msInfo.Count > 1 )
sourceInfo.name += " (" + msData.run.id + ")";
sourceInfo.populateFromMSData( msData );
sourceInfoList.Add( sourceInfo );
}
} catch
{
sourceInfoList[0].spectra = 0;
sourceInfoList[0].type = "Invalid " + sourceInfoList[0].type;
}
foreach( SourceInfo sourceInfo in sourceInfoList )
{
sourceInfo.size = (UInt64) fileInfo.Length;
sourceInfo.dateModified = fileInfo.LastWriteTime;
}
return sourceInfoList.ToArray();
}
return null;
}
public MsDataFileImpl(string path, int sampleIndex = 0, LockMassParameters lockmassParameters = null, bool simAsSpectra = false, bool srmAsSpectra = false, bool acceptZeroLengthSpectra = true, bool requireVendorCentroidedMS1 = false, bool requireVendorCentroidedMS2 = false)
{
// see note above on enabling performance measurement
_perf = PerfUtilFactory.CreatePerfUtil("MsDataFileImpl " + // Not L10N
string.Format("{0},sampleIndex:{1},lockmassCorrection:{2},simAsSpectra:{3},srmAsSpectra:{4},acceptZeroLengthSpectra:{5},requireVendorCentroidedMS1:{6},requireVendorCentroidedMS2:{7}", // Not L10N
path, sampleIndex, !(lockmassParameters == null || lockmassParameters.IsEmpty), simAsSpectra, srmAsSpectra, acceptZeroLengthSpectra, requireVendorCentroidedMS1, requireVendorCentroidedMS2));
using (_perf.CreateTimer("open")) // Not L10N
{
FilePath = path;
_msDataFile = new MSData();
_config = new ReaderConfig {simAsSpectra = simAsSpectra, srmAsSpectra = srmAsSpectra, acceptZeroLengthSpectra = acceptZeroLengthSpectra};
_lockmassParameters = lockmassParameters;
FULL_READER_LIST.read(path, _msDataFile, sampleIndex, _config);
_requireVendorCentroidedMS1 = requireVendorCentroidedMS1;
_requireVendorCentroidedMS2 = requireVendorCentroidedMS2;
}
}
public Reader(ReaderConfig config){}
public SpectrumSource( string filepath )
{
MSDataList msdList = new MSDataList();
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
ReaderList.FullReaderList.read(filepath, msdList, readerConfig);
msDataFile = msdList[0];
//msDataFile = new MSDataFile(filepath);
sourceFilepath = filepath;
// create dummy spectrum/chromatogram list to simplify logic
msDataFile.run.spectrumList = msDataFile.run.spectrumList ?? new SpectrumListSimple();
msDataFile.run.chromatogramList = msDataFile.run.chromatogramList ?? new ChromatogramListSimple();
setInputFileWaitHandle = new EventWaitHandle( false, EventResetMode.ManualReset );
/*setInputFileDelegate = new ParameterizedThreadStart( startSetInputFile );
Thread setInputFileThread = new Thread( setInputFileDelegate );
setInputFileThread.Start( (object) filepath );*/
}
public void setReaderConfig(ReaderConfig config)
{
readerconfig.attenuation = config.attenuation;
readerconfig.modeIndex = config.modeIndex;
readerconfig.tagPopulation = config.tagPopulation;
readerconfig.tagTransitTime = config.tagTransitTime;
readerconfig.antennaID = config.antennaID;
readerconfig.readerSensitivity = config.readerSensitivity;
readerconfig.channelIndex = config.channelIndex;
readerconfig.hopTableIndex = config.hopTableIndex;
readerconfig.periodicTriggerValue = config.periodicTriggerValue;
}