public void GetPhaseSetTagIndexes_NoPS_Return_NegativeOne()
{
var position = new Mock <ISimplePosition>();
var vcfFields = new string[VcfCommon.MinNumColumnsSampleGenotypes];
vcfFields[VcfCommon.FormatIndex] = "GT";
position.SetupGet(x => x.VcfFields).Returns(vcfFields);
var functionBlockRanges = new List <int> {
102
};
var positionSet = new PositionSet(new List <ISimplePosition> {
position.Object
}, functionBlockRanges);
Assert.Equal(new[] { new [] { -1 } }, positionSet.GetSampleTagIndexes(new[] { "PS" }));
}
public void GetPhaseSetTagIndexes_Return_Correct_PSIndex()
{
var position1 = new Mock<ISimplePosition>();
var vcfFields1 = new string[VcfCommon.MinNumColumnsSampleGenotypes];
vcfFields1[VcfCommon.FormatIndex] = "GT:PS";
position1.SetupGet(x => x.VcfFields).Returns(vcfFields1);
var position2 = new Mock<ISimplePosition>();
var vcfFields2 = new string[VcfCommon.MinNumColumnsSampleGenotypes];
vcfFields2[VcfCommon.FormatIndex] = "GT:AA:PS";
position2.SetupGet(x => x.VcfFields).Returns(vcfFields2);
var position3 = new Mock<ISimplePosition>();
var vcfFields3 = new string[VcfCommon.MinNumColumnsSampleGenotypes];
vcfFields3[VcfCommon.FormatIndex] = "GT:AA:BB:PS";
position3.SetupGet(x => x.VcfFields).Returns(vcfFields3);
var positionSet = new PositionSet(new List<ISimplePosition> { position1.Object, position2.Object, position3.Object }, new List<int>());
Assert.Equal(new[] {new[] { 1, 2, 3 }}, positionSet.GetSampleTagIndexes(new[] { "PS" }));
}