protected override Task Context()
{
_calculationMethodCacheMapper = A.Fake <CalculationMethodCacheMapper>();
_processMappingMapper = A.Fake <ProcessMappingMapper>();
_logger = A.Fake <ILogger>();
_project = new PKSimProject();
_calculationMethodSnapshot = new CalculationMethodCache();
sut = new CompoundPropertiesMapper(_calculationMethodCacheMapper, _processMappingMapper, _logger);
_compoungGroupSelectionOneAlternative = new CompoundGroupSelection
{
AlternativeName = "ALT1",
GroupName = "ALTERNATIVE_GROUP_1"
};
_compoungGroupSelectioTwoAlternatives = new CompoundGroupSelection
{
AlternativeName = "ALT2",
GroupName = "ALTERNATIVE_GROUP_2"
};
_compound = new Compound
{
Name = "COMP",
};
_protocol = new SimpleProtocol
{
Name = "PROTOCOL"
};
_parameterAlternativeGroupWithOneAlternative = new ParameterAlternativeGroup {
Name = _compoungGroupSelectionOneAlternative.GroupName
};
_parameterAlternativeGroupWithTwoAlternatives = new ParameterAlternativeGroup {
Name = _compoungGroupSelectioTwoAlternatives.GroupName
};
_parameterAlternativeGroupWithTwoAlternatives.AddAlternative(new ParameterAlternative {
Name = "ALT1"
});
_parameterAlternativeGroupWithTwoAlternatives.AddAlternative(new ParameterAlternative {
Name = "ALT2"
});
_compound.AddParameterAlternativeGroup(_parameterAlternativeGroupWithOneAlternative);
_compound.AddParameterAlternativeGroup(_parameterAlternativeGroupWithTwoAlternatives);
_compoundProperties = new Model.CompoundProperties();
_compoundProperties.AddCompoundGroupSelection(_compoungGroupSelectionOneAlternative);
_compoundProperties.AddCompoundGroupSelection(_compoungGroupSelectioTwoAlternatives);
_compoundProperties.Compound = _compound;
_enzymaticProcess = new EnzymaticProcess {
Name = "EnzymaticProcess"
};
_specificBindingProcess = new SpecificBindingPartialProcess {
Name = "SpecificBinding"
};
_transportProcess = new SystemicProcess {
Name = "Transport", SystemicProcessType = SystemicProcessTypes.GFR
};
_compound.AddProcess(_enzymaticProcess);
_compound.AddProcess(_specificBindingProcess);
_compound.AddProcess(_transportProcess);
_enzymaticPartialProcessSelection = new EnzymaticProcessSelection {
ProcessName = _enzymaticProcess.Name
};
_specificBindingPartialProcessSelection = new ProcessSelection {
ProcessName = _specificBindingProcess.Name
};
_transportSystemicProcessSelection = new SystemicProcessSelection {
ProcessName = _transportProcess.Name, ProcessType = _transportProcess.SystemicProcessType,
};
_compoundProperties.Processes.MetabolizationSelection.AddPartialProcessSelection(_enzymaticPartialProcessSelection);
_compoundProperties.Processes.SpecificBindingSelection.AddPartialProcessSelection(_specificBindingPartialProcessSelection);
_compoundProperties.Processes.TransportAndExcretionSelection.AddSystemicProcessSelection(_transportSystemicProcessSelection);
_snapshotProcess1 = new CompoundProcessSelection {
Name = _enzymaticPartialProcessSelection.ProcessName
};
_snapshotProcess2 = new CompoundProcessSelection {
Name = _specificBindingPartialProcessSelection.ProcessName
};
_snapshotProcess3 = new CompoundProcessSelection {
Name = _transportSystemicProcessSelection.ProcessName
};
_formulation = new Formulation
{
Id = "123456"
};
_compoundProperties.ProtocolProperties.Protocol = _protocol;
_compoundProperties.ProtocolProperties.AddFormulationMapping(new FormulationMapping
{
FormulationKey = "F1",
TemplateFormulationId = _formulation.Id
});
_project.AddBuildingBlock(_formulation);
A.CallTo(() => _calculationMethodCacheMapper.MapToSnapshot(_compoundProperties.CalculationMethodCache)).Returns(_calculationMethodSnapshot);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_enzymaticPartialProcessSelection)).Returns(_snapshotProcess1);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_specificBindingPartialProcessSelection)).Returns(_snapshotProcess2);
A.CallTo(() => _processMappingMapper.MapToSnapshot(_transportSystemicProcessSelection)).Returns(_snapshotProcess3);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess1, _enzymaticProcess)).Returns(_enzymaticPartialProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess2, _specificBindingProcess)).Returns(_specificBindingPartialProcessSelection);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotProcess3, _transportProcess)).Returns(_transportSystemicProcessSelection);
return(_completed);
}
public CompoundPropertiesContext(PKSimProject project, Model.Simulation simulation)
{
Project = project;
Simulation = simulation;
}
protected override void Context()
{
_buildingBlockIconRetriever = A.Fake <IBuildingBlockIconRetriever>();
_view = A.Fake <ISimulationExplorerView>();
A.CallTo(() => _view.TreeView).Returns(A.Fake <IUxTreeView>());
_treeNodeFactory = A.Fake <ITreeNodeFactory>();
_contextMenuFactory = A.Fake <ITreeNodeContextMenuFactory>();
_regionResolver = A.Fake <IRegionResolver>();
_buildingBlockInSimulationManager = A.Fake <IBuildingBlockInSimulationManager>();
_buildingBlockTask = A.Fake <IBuildingBlockTask>();
_toolTipNodeCreator = A.Fake <IToolTipPartCreator>();
_projectRetriever = A.Fake <IProjectRetriever>();
_multipleTreeNodeContextMenuFactory = A.Fake <IMultipleTreeNodeContextMenuFactory>();
_parameterAnalysablesInExplorerPresenter = A.Fake <IParameterAnalysablesInExplorerPresenter>();
_simulationFolderNode = new RootNode(RootNodeTypes.SimulationFolder);
_comparisonFolderNode = new RootNode(RootNodeTypes.ComparisonFolder);
_project = new PKSimProject();
_usedObservedData = new UsedObservedData {
Id = "UsedData"
};
_simulation = new IndividualSimulation().WithName("individualSimulation").WithId("individualSimulation");
_populationSimulation = new PopulationSimulation().WithName("populationSimulation").WithId("populationSimulation");
_importedSimulaton = A.Fake <Simulation>().WithName("ImportedSimulation").WithId("ImportedSimulation");
A.CallTo(() => _importedSimulaton.IsImported).Returns(true);
_simulation.Properties = new SimulationProperties();
_simulation.ModelProperties = new ModelProperties();
_simulation.ModelConfiguration = A.Fake <ModelConfiguration>();
_populationSimulation.Properties = new SimulationProperties();
_populationSimulation.ModelProperties = new ModelProperties();
_populationSimulation.ModelConfiguration = A.Fake <ModelConfiguration>();
_classificationPresenter = A.Fake <IClassificationPresenter>();
_project.AddBuildingBlock(_simulation);
_project.AddBuildingBlock(_populationSimulation);
var classifiableIndividualSimulation = new ClassifiableSimulation {
Subject = _simulation
};
var classfiablePopulationSimulation = new ClassifiableSimulation {
Subject = _populationSimulation
};
var classifiableImportSimulation = new ClassifiableSimulation {
Subject = _importedSimulaton
};
_project.AddClassifiable(classifiableIndividualSimulation);
_project.AddClassifiable(classfiablePopulationSimulation);
_individualSimulationNode = new SimulationNode(classifiableIndividualSimulation);
_populationSimulationNode = new SimulationNode(classfiablePopulationSimulation);
_importedSimulationNode = new SimulationNode(classifiableImportSimulation);
_usedObservedDataNode = A.Fake <ITreeNode>();
A.CallTo(() => _treeNodeFactory.CreateFor(classifiableIndividualSimulation)).Returns(_individualSimulationNode);
A.CallTo(() => _treeNodeFactory.CreateFor(classfiablePopulationSimulation)).Returns(_populationSimulationNode);
A.CallTo(() => _treeNodeFactory.CreateFor(classifiableImportSimulation)).Returns(_importedSimulationNode);
A.CallTo(() => _treeNodeFactory.CreateFor(_usedObservedData)).Returns(_usedObservedDataNode);
_project.AddBuildingBlock(_importedSimulaton);
var simulationComparison = A.Fake <ISimulationComparison>();
var classifiableComparison = new ClassifiableComparison {
Subject = simulationComparison
};
_comparisonNode = new ComparisonNode(classifiableComparison);
_project.AddSimulationComparison(simulationComparison);
A.CallTo(() => _treeNodeFactory.CreateFor(classifiableComparison)).Returns(_comparisonNode);
_usedCompoundBuildingBlock = new UsedBuildingBlock("toto", PKSimBuildingBlockType.Compound)
{
Id = "usedBB"
};
_simulation.AddUsedBuildingBlock(_usedCompoundBuildingBlock);
_simulation.AddUsedObservedData(_usedObservedData);
_project.AddClassifiable(classifiableComparison);
_templageCompoundBuildingBlock = A.Fake <IPKSimBuildingBlock>();
_usedBuildingBlockNode = new UsedBuildingBlockInSimulationNode(_simulation, _usedCompoundBuildingBlock, _templageCompoundBuildingBlock);
A.CallTo(() => _treeNodeFactory.CreateFor(_simulation, _usedCompoundBuildingBlock)).Returns(_usedBuildingBlockNode);
A.CallTo(() => _buildingBlockIconRetriever.IconFor(_simulation)).Returns(ApplicationIcons.SimulationGreen);
A.CallTo(() => _buildingBlockIconRetriever.IconFor(_populationSimulation)).Returns(ApplicationIcons.SimulationGreen);
A.CallTo(() => _buildingBlockIconRetriever.IconFor(_usedCompoundBuildingBlock)).Returns(ApplicationIcons.CompoundRed);
A.CallTo(() => _view.TreeView.NodeById(_simulation.Id)).Returns(_individualSimulationNode);
A.CallTo(() => _view.TreeView.NodeById(_usedCompoundBuildingBlock.Id)).Returns(_usedBuildingBlockNode);
A.CallTo(() => _view.TreeView.NodeById(RootNodeTypes.SimulationFolder.Id)).Returns(_simulationFolderNode);
A.CallTo(() => _view.TreeView.NodeById(RootNodeTypes.ComparisonFolder.Id)).Returns(_comparisonFolderNode);
_observedDataInSimulationManager = A.Fake <IObservedDataInSimulationManager>();
sut = new SimulationExplorerPresenter(_view, _treeNodeFactory, _contextMenuFactory, _multipleTreeNodeContextMenuFactory, _buildingBlockIconRetriever,
_regionResolver, _buildingBlockTask, _buildingBlockInSimulationManager, _toolTipNodeCreator, _projectRetriever, _classificationPresenter, _parameterAnalysablesInExplorerPresenter, _observedDataInSimulationManager);
A.CallTo(() => _projectRetriever.CurrentProject).Returns(_project);
}
