public NucleotideCouple buildHalfCoupleChainFromOneSingle(Nucleotide chain)
{
if (chain.isPaired)
{
return(null);
}
chain = getHeadOfSingleChain(chain);
Nucleotide nhead = chain;
NucleotideCouple n = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
NucleotideCouple head = n;
n.setLeftColor(chain.getColor());
n.setType(chain.type, Nucleotide.Type.Empty);
n.needHelix = false;
while (chain.next)
{
chain = chain.next;
n.next = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
n.next.setLeftColor(chain.getColor());
n.next.setType(chain.type, Nucleotide.Type.Empty);
n.next.prev = n;
n.next.needHelix = false;
n.next.transform.rotation = nhead.transform.rotation;
n = n.next;
}
head.transform.rotation = nhead.transform.rotation;
head.transform.position = nhead.transform.position;
head.broadcastUpdateTransform();
destroySingleChain(chain);
return(head);
}
void OnTriggerEnter(Collider other)
{
if (other.tag == "NucleotideCouple")
{
Debug.Log("duplicate");
NucleotideCouple chain = other.gameObject.GetComponent <NucleotideCouple>();
NucleotideDirector.getInstance().duplicateCoupleChain(chain);
}
}
public void helixCoupleChain(NucleotideCouple chain)
{
NucleotideCouple n = getHeadOfCoupleChain(chain);
while (n)
{
n.needHelix = true;
n = n.next;
}
}
public void duplicateCoupleChain(NucleotideCouple chain)
{
if (duplicating)
{
return;
}
duplicating = true;
NucleotideCouple head = getHeadOfCoupleChain(chain);
StartCoroutine(duplicateCoupleChainRoutine(head));
}
public NucleotideCouple getHeadOfCoupleChain(NucleotideCouple n)
{
NucleotideCouple head = n;
while (head.prev)
{
head = head.prev;
}
return(head);
}
public IEnumerator fillHalfCoupleChainRoutine(NucleotideCouple head, float timeGap = 0.1F)
{
while (head)
{
head.setType(head.nucleotide1.type, getPairType(head.nucleotide1.type));
head.setRightColor(Color.white);
head.needHelix = true;
head = head.next;
yield return(new WaitForSeconds(timeGap));
}
}
public NucleotideCouple buildCoupleChainFromOneSingleAnimation(Nucleotide chain, float timeGap = 0.8F)
{
NucleotideCouple head = buildHalfCoupleChainFromOneSingle(chain);
if (head == null)
{
return(null);
}
StartCoroutine(fillHalfCoupleChainRoutine(head, timeGap));
return(head);
}
public string CoupleChain2String(NucleotideCouple chain)
{
NucleotideCouple n = getHeadOfCoupleChain(chain);
string result = "2";
while (n)
{
result += Type2Char(n.getLeftType()) + Type2Char(n.getRightType());
n = n.next;
}
return(result);
}
public void destroyCoupleChain(NucleotideCouple chain)
{
NucleotideCouple prev, head = getHeadOfCoupleChain(chain);
while (head)
{
prev = head;
head = head.next;
Destroy(prev.gameObject);
}
Debug.Log("Destroyed");
}
public List <Nucleotide> buildSingleChainsFromCouple(NucleotideCouple head)
{
Nucleotide leftHead, left, rightTail, right;
NucleotideCouple curr = head;
leftHead = left = (Instantiate(singlePrefab) as GameObject).GetComponent <Nucleotide>();
rightTail = right = (Instantiate(singlePrefab) as GameObject).GetComponent <Nucleotide>();
left.setType(curr.getLeftType());
left.setColor(curr.getLeftColor());
right.setType(curr.getRightType());
right.setColor(curr.getRightColor());
leftHead.transform.rotation = curr.nucleotide1.transform.rotation;
leftHead.transform.position = curr.nucleotide1.transform.position + leftHead.transform.rotation * Vector3.left * 2.0F;
rightTail.transform.rotation = curr.nucleotide2.transform.rotation;
rightTail.transform.position = curr.nucleotide2.transform.position + rightTail.transform.rotation * Vector3.left * 2.0F;
curr = curr.next;
while (curr)
{
Nucleotide leftPrev, rightPrev;
leftPrev = left;
left = (Instantiate(singlePrefab) as GameObject).GetComponent <Nucleotide>();
leftPrev.next = left;
left.prev = leftPrev;
left.setType(curr.getLeftType());
left.setColor(curr.getLeftColor());
rightPrev = right;
right = (Instantiate(singlePrefab) as GameObject).GetComponent <Nucleotide>();
right.next = rightPrev;
rightPrev.prev = right;
right.setType(curr.getRightType());
right.setColor(curr.getRightColor());
curr = curr.next;
/*if (head)
* Destroy(head.prev);*/
}
leftHead.broadcastUpdateTransform();
rightTail.broadcastUpdateTransform();
destroyCoupleChain(head);
List <Nucleotide> result = new List <Nucleotide>();
result.Add(leftHead);
result.Add(rightTail);
return(result);
}
public void deHelix()
{
NucleotideCouple pre = prev;
NucleotideCouple nex = next;
while (pre != null)
{
pre.needHelix = false;
pre = pre.prev;
}
while (nex != null)
{
nex.needHelix = false;
nex = nex.next;
}
}
public NucleotideCouple buildCoupleChainFromTwoSingles(Nucleotide c1, Nucleotide c2, Vector3 position = default(Vector3))
{
if (c1.isPaired || c2.isPaired)
{
return(null);
}
if (getLengthOfSingleChain(c1) != getLengthOfSingleChain(c2))
{
return(null);
}
c1 = getHeadOfSingleChain(c1);
if (c1 == getHeadOfSingleChain(c2))
{
return(null);
}
c2 = getTailOfSingleChain(c2);
NucleotideCouple n = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
NucleotideCouple head = n;
n.setLeftColor(c1.getColor());
n.setRightColor(c2.getColor());
n.setType(c1.type, c2.type);
while (c1.next)
{
c1 = c1.next;
c2 = c2.prev;
n.next = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
n.next.setLeftColor(c1.getColor());
n.next.setRightColor(c2.getColor());
n.next.setType(c1.type, c2.type);
n.next.prev = n;
n = n.next;
}
head.transform.position = position;
head.broadcastUpdateTransform();
destroySingleChain(c1);
destroySingleChain(c2);
return(n);
}
//核苷酸之间氢键角度不知道怎么归位，deHelix先注释掉了
//public void deHelix(NucleotideCouple n)
//{
// if(n.needHelix == true)
// {
// n.needHelix = false;
// }
//}
public NucleotideCouple buildCoupleChainFromOneSingle(Nucleotide n, bool reverse = false)
{
if (n.isPaired)
{
return(null);
}
Nucleotide head = getHeadOfSingleChain(n);
Nucleotide next = head.next;
if (next == null)
{
return(buildCoupleFromOneSingle(head));
}
else
{
NucleotideCouple coupleHead = buildCoupleFromOneSingle(head);
NucleotideCouple couple = coupleHead;
while (next.next)
{
next = next.next;
couple.next = buildCoupleFromOneSingle(next.prev, reverse);
couple.next.prev = couple;
couple = couple.next;
}
couple.next = buildCoupleFromOneSingle(next);
couple.next.prev = couple;
if (!reverse)
{
coupleHead.broadcastUpdateTransform();
}
else
{
couple.next.broadcastUpdateTransform();
}
return(coupleHead);
}
}
public void updateTransform(Vector3 position, Quaternion rotation, NucleotideCouple from, bool updateRotation = false)
{
this.transform.position = position;
if (updateRotation)
{
this.transform.rotation = rotation;
}
if (prev && from != prev)
{
Quaternion prevRotation = rotation;
Vector3 prevPosition = position + rotation * Vector3.up * gap;
prev.updateTransform(prevPosition, prevRotation, this, updateRotation);
}
if (next && from != next)
{
Quaternion nextRotation = rotation;
Vector3 nextPosition = position + rotation * Vector3.down * gap;
next.updateTransform(nextPosition, nextRotation, this, updateRotation);
}
}
public NucleotideCouple String2CoupleChain(string s, Vector3 position = default(Vector3))
{
if (s[0] != '2')
{
return(null);
}
NucleotideCouple n = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
NucleotideCouple head = n;
n.setType(Char2Type(s[1]), Char2Type(s[2]));
for (int i = 3; i < s.Length; i += 2)
{
n.next = (Instantiate(couplePrefab) as GameObject).GetComponent <NucleotideCouple>();
n.next.setType(Char2Type(s[i]), Char2Type(s[i + 1]));
n.next.prev = n;
n = n.next;
}
head.transform.position = position;
head.broadcastUpdateTransform();
return(n);
}
IEnumerator duplicateCoupleChainRoutine(NucleotideCouple head)
{
Debug.Log("DeHelix");
deHelixCoupleChain(head);
yield return(new WaitForSeconds(5));
Debug.Log("Build Single Chain");
List <Nucleotide> singles = buildSingleChainsFromCouple(head);
yield return(new WaitForSeconds(5));
NucleotideCouple c1 = buildCoupleChainFromOneSingleAnimation(singles[0]);
NucleotideCouple c2 = buildCoupleChainFromOneSingleAnimation(singles[1]);
deHelixCoupleChain(c1);
deHelixCoupleChain(c2);
yield return(new WaitForSeconds(2));
helixCoupleChain(c1);
helixCoupleChain(c2);
duplicating = false;
}
