public void Create_When_T_Is_ISymmetricMatrix_of_double()
{
//Arrange
var provider = new NetworkFactoryProvider();
//Act
INetworkFactory factory = provider.Create<ISymmetricMatrix<double>>();
//Assert
Assert.NotNull(factory);
Assert.IsType<SymmetricMatrixFactory<double>>(factory);
}
public void Create_When_T_Is_IBasicAdjList()
{
//Arrange
var provider = new NetworkFactoryProvider();
//Act
INetworkFactory factory = provider.Create<IBasicAdjList>();
//Assert
Assert.NotNull(factory);
Assert.IsType<BasicAdjListFactory>(factory);
}
public void Create_Where_Param_Is_IFullMatrix_of_double()
{
//Arrange
var provider = new NetworkFactoryProvider();
var mockNetwork = new Mock<IFullMatrix<double>>();
//Act
var factory = provider.Create(mockNetwork.Object);
//Assert
Assert.NotNull(factory);
Assert.IsType<FullMatrixFactory<double>>(factory);
}
public void Create_Where_Param_Is_IBasicAdjList()
{
//Arrange
var provider = new NetworkFactoryProvider();
var mockNetwork = new Mock<IBasicAdjList>();
//Act
var factory = provider.Create(mockNetwork.Object);
//Assert
Assert.NotNull(factory);
Assert.IsType<BasicAdjListFactory>(factory);
}
internal IBasicAdjList InitializeNetwork(int nodeCount, int edgeCount)
{
// check for and remove duplicates before data attrib tables are created
RemoveDuplicatesFromSecondList(NodeDataHeaders, NodePropertyHeaders);
RemoveDuplicatesFromSecondList(EdgeDataHeaders, EdgePropertyHeaders);
//----
var helper = new KnownHeaderNamesReaderHelper();
if(DisableDataConversions)
{
TranslateHeadersToStrings(NodeDataHeaders);
TranslateHeadersToStrings(NodePropertyHeaders);
TranslateHeadersToStrings(EdgeDataHeaders);
TranslateHeadersToStrings(EdgePropertyHeaders);
}
else
{
TranslateNodeHeaderNames(NodeDataHeaders, helper);
TranslateNodeHeaderNames(NodePropertyHeaders, helper);
TranslateEdgeHeaderNames(EdgeDataHeaders, helper);
TranslateEdgeHeaderNames(EdgePropertyHeaders, helper);
CheckForAndManageNodeSizeCase(NodePropertyHeaders);
}
IBasicAdjList net = null;
using (var p = new NetworkFactoryProvider())
{
using (var fac = p.Create<IBasicAdjList>())
{
fac.EnableNodeDataAttributes = true;
fac.EnableEdgeDataAttributes = true;
fac.NetworkName = Path.GetFileNameWithoutExtension(File);
net = fac.CreateNetwork(Guid.NewGuid(), nodeCount) as IBasicAdjList;
}
}
CreateNodeAttribs(net, NodeDataHeaders);
CreateNodeAttribs(net, NodePropertyHeaders);
CreateEdgeAttribs(net, EdgeDataHeaders);
CreateEdgeAttribs(net, EdgePropertyHeaders);
return net;
}
/// <summary>
/// Reads the graph element attributes and creates the network, then does 1 pass to read the nodes.
/// </summary>
/// <param name="network"></param>
/// <param name="reader"></param>
/// <remarks>Assumes reader.Name == "graph" and reader.IsStartElement() == true</remarks>
internal void ReadNetwork(out IAdjList network, XmlReader reader)
{
network = null;
reader.MoveToAttribute("id");
string idStr = reader["id"];
Guid id = ToGuid(idStr);
reader.MoveToAttribute("edgedefault");
string directedStr = reader["edgedefault"];
bool isDirected = (string.Compare(directedStr, BlueSpider.GraphML.XMLConstants._Directed) == 0);
string name = null;
if (reader.MoveToAttribute("name"))
{
name = reader["name"];
}
else
name = Path.GetFileNameWithoutExtension(File);
int n = 0;
if (reader.MoveToAttribute("parse.nodes"))
{
string numNodesStr = reader["parse.nodes"];
if (!int.TryParse(numNodesStr, out n))
n = 0;
}
reader.MoveToElement();
using (var provider = new NetworkFactoryProvider())
{
using (var fac = provider.Create<IBasicAdjList>())
{
fac.EnableNodeDataAttributes = true;
fac.EnableEdgeDataAttributes = true;
network = fac.CreateNetwork(id, n) as IBasicAdjList;
network.Name = name;
network.IsDirected = isDirected;
}
}
ReadGraphElements(network, reader);
}
internal INetwork CreateFromFullMatrix(string networkName)
{
// symmetry determines directedness.
_IsSymmetric = CheckForSymmetry();
IAdjList network = null;
using (var provider = new NetworkFactoryProvider())
{
using (var fac = provider.Create<IBasicAdjList>())
{
fac.EnableNodeDataAttributes = true;
fac.EnableEdgeDataAttributes = true;
network = fac.CreateNetwork(_NetworkId, _n) as IBasicAdjList;
network.Name = networkName;
network.IsDirected = !_IsSymmetric;
}
}
int edgeWeightsColIndex = -1;
var edgeAttribNetwork = network as IEdgeAttributes;
if (IncludeValsAsEdgeData)
{
edgeWeightsColIndex = edgeAttribNetwork.EdgeData.AddColumn("Edge weights", typeof(double), 0.0);
}
#region Set the node labels
// set the node labels
if (IncludeNodeLabels)
{
if (_Labels != null && _Labels.Count == _n)
{
SetNodeLabels(network, _Labels);
}
else if (_RowLabels != null && _RowLabels.Count == _n)
{
// if cant use regular labels, maybe we can use row labels
SetNodeLabels(network, _RowLabels);
}
else if (_ColLabels != null && _ColLabels.Count == _n)
{
// as a last resort, try using col labels
SetNodeLabels(network, _ColLabels);
}
}
#endregion
IEdge edge = null;
int k;
if (_IsSymmetric)
{
#region Symmetric matrix
// by default take upper half
for (int i = 0; i < _n; i++)
{
for (int j = i + 1; j < _n; j++)
{
k = i * _n + j;
if (_vals[k] != 0)
{
if (i == j)
AppendMssg(string.Format("Self-looped edge: node[{0}] -> node[{1}].", i, j));
edge = network.CreateEdge(network.Nodes[i], network.Nodes[j]);
if (IncludeValsAsEdgeData)
edgeAttribNetwork.EdgeData.SetValue<double>(edge, edgeWeightsColIndex, _vals[k]);
}
}
}
#endregion
}
else
{
#region Asymmetric matrix
for (int i = 0; i < _n; i++)
{
for (int j = 0; j < _n; j++)
{
k = i * _n + j;
if (_vals[k] != 0)
{
if (i == j)
AppendMssg(string.Format("Self-looped edge: node[{0}] -> node[{1}].", i, j));
edge = network.CreateEdge(network.Nodes[i], network.Nodes[j]);
if (IncludeValsAsEdgeData)
edgeAttribNetwork.EdgeData.SetValue<double>(edge, edgeWeightsColIndex, _vals[k]);
}
}
}
#endregion
}
return network;
}