public void GetMutationCategory_StringInput()
{
//Happy Path
Assert.Equal(MutationCategory.AtoC, MutationCategoryUtil.GetMutationCategory("AtoC"));
Assert.Equal(MutationCategory.GtoT, MutationCategoryUtil.GetMutationCategory("GtoT"));
//we dont handle these cases
Assert.Throws <ArgumentException>(() => (MutationCategory.AtoC, MutationCategoryUtil.GetMutationCategory("Atoc")));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("gtot"));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("TtoTT"));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("GGtoTZ"));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("GtoG"));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("Gto."));
Assert.Throws <ArgumentException>(() => MutationCategoryUtil.GetMutationCategory("this will never work"));
}
public void GetMutationCategory_IsValidInput()
{
//Happy Path
Assert.True(MutationCategoryUtil.IsValidCategory("AtoC"));
Assert.True(MutationCategoryUtil.IsValidCategory("GtoT"));
//we dont handle these cases
Assert.False(MutationCategoryUtil.IsValidCategory("Atoc"));
Assert.False(MutationCategoryUtil.IsValidCategory("gtot"));
Assert.False(MutationCategoryUtil.IsValidCategory("TtoTT"));
Assert.False(MutationCategoryUtil.IsValidCategory("GGtoTZ"));
Assert.False(MutationCategoryUtil.IsValidCategory("GtoG"));
Assert.False(MutationCategoryUtil.IsValidCategory("Gto."));
Assert.False(MutationCategoryUtil.IsValidCategory("this will never work"));
}
public void GetMutationCategory_VariantInput()
{
var v = MakeDummyAllele("A", "C");
Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "T");
Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("A", "c");
Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "t");
Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "t");
Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "TT");
Assert.Equal(MutationCategory.Insertion, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("GGG", "T");
Assert.Equal(MutationCategory.Deletion, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("GG", "TZ");
Assert.Equal(MutationCategory.Other, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "G");
Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", "g");
Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("g", "G");
Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("g", "g");
Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v));
v = MakeDummyAllele("G", ".");
Assert.Equal(MutationCategory.Reference, MutationCategoryUtil.GetMutationCategory(v));
}
