public void TestMultiChoiceParam()
{
MultiChoiceParam sparam = new MultiChoiceParam("myname", new [] { 1, 2, 3 })
{
Values = new [] { "a", "b" }, Repeats = true
};
MultiChoiceParam sparam2 = (MultiChoiceParam)sparam.ToXmlAndBack();
Assert.AreEqual(sparam.Name, sparam2.Name);
Assert.AreEqual(sparam.Repeats, sparam2.Repeats);
Assert.IsTrue(sparam.Value.SequenceEqual(sparam2.Value));
Assert.IsTrue(sparam.Values.SequenceEqual(sparam2.Values));
}
/// <summary>
/// Convert <see cref="BaseLib.Param"/> to <see cref="BaseLibS.Param"/>
/// </summary>
/// <param name="p"></param>
/// <returns></returns>
public static Parameter Convert(Parameter p)
{
if (p.Type == ParamType.Server)
{
return(p);
}
if (p is RegexReplaceParamWf)
{
RegexReplaceParamWf q = (RegexReplaceParamWf)p;
RegexReplaceParam b = new RegexReplaceParam(q.Name, q.Value.Item1, q.Value.Item2, q.Previews)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is RegexMatchParamWf)
{
RegexMatchParamWf q = (RegexMatchParamWf)p;
RegexMatchParam b = new RegexMatchParam(q.Name, q.Value, q.Previews)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is BoolParamWf)
{
BoolParamWf q = (BoolParamWf)p;
BoolParam b = new BoolParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is BoolWithSubParamsWf)
{
BoolWithSubParamsWf q = (BoolWithSubParamsWf)p;
q.SubParamsFalse?.Convert(Convert);
q.SubParamsTrue?.Convert(Convert);
BoolWithSubParams b = new BoolWithSubParams(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
SubParamsFalse = q.SubParamsFalse,
SubParamsTrue = q.SubParamsTrue,
Default = q.Default,
ParamNameWidth = q.ParamNameWidth,
TotalWidth = q.TotalWidth,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is DictionaryIntValueParamWf)
{
DictionaryIntValueParamWf q = (DictionaryIntValueParamWf)p;
DictionaryIntValueParam b = new DictionaryIntValueParam(q.Name, q.Value, q.Keys)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is DoubleParamWf)
{
DoubleParamWf q = (DoubleParamWf)p;
DoubleParam b = new DoubleParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is FileParamWf)
{
FileParamWf q = (FileParamWf)p;
FileParam b = new FileParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Filter = q.Filter,
ProcessFileName = q.ProcessFileName,
Save = q.Save,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is FolderParamWf)
{
FolderParamWf q = (FolderParamWf)p;
FolderParam b = new FolderParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is IntParamWf)
{
IntParamWf q = (IntParamWf)p;
IntParam b = new IntParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is LabelParamWf)
{
LabelParamWf q = (LabelParamWf)p;
LabelParam b = new LabelParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is MultiChoiceMultiBinParamWf)
{
MultiChoiceMultiBinParamWf q = (MultiChoiceMultiBinParamWf)p;
MultiChoiceMultiBinParam b = new MultiChoiceMultiBinParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Bins = q.Bins,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is MultiChoiceParamWf)
{
MultiChoiceParamWf q = (MultiChoiceParamWf)p;
MultiChoiceParam b = new MultiChoiceParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Repeats = q.Repeats,
Values = q.Values,
Default = q.Default,
DefaultSelections = q.DefaultSelections,
DefaultSelectionNames = q.DefaultSelectionNames,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is MultiFileParamWf)
{
MultiFileParamWf q = (MultiFileParamWf)p;
MultiFileParam b = new MultiFileParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Filter = q.Filter,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is MultiStringParamWf)
{
MultiStringParamWf q = (MultiStringParamWf)p;
MultiStringParam b = new MultiStringParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is SingleChoiceParamWf)
{
SingleChoiceParamWf q = (SingleChoiceParamWf)p;
SingleChoiceParam b = new SingleChoiceParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is SingleChoiceWithSubParamsWf)
{
SingleChoiceWithSubParamsWf q = (SingleChoiceWithSubParamsWf)p;
foreach (Parameters param in q.SubParams)
{
param?.Convert(Convert);
}
SingleChoiceWithSubParams b = new SingleChoiceWithSubParams(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Default = q.Default,
SubParams = new Parameters[q.SubParams.Count],
ParamNameWidth = q.ParamNameWidth,
TotalWidth = q.TotalWidth,
Url = q.Url
};
for (int i = 0; i < q.SubParams.Count; i++)
{
b.SubParams[i] = q.SubParams[i];
}
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is StringParamWf)
{
StringParamWf q = (StringParamWf)p;
StringParam b = new StringParam(q.Name, q.Value)
{
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
if (p is Ms1LabelParamWf)
{
Ms1LabelParamWf q = (Ms1LabelParamWf)p;
Ms1LabelParam b = new Ms1LabelParam(q.Name, q.Value)
{
Values = q.Values,
Multiplicity = q.Multiplicity,
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers())
{
b.ValueChanged += act;
}
return(b);
}
throw new Exception("Could not convert ParamWfeter");
}
public void TestMultiChoiceParam()
{
var sparam = new MultiChoiceParam("myname", new [] {1,2,3}) { Values = new [] {"a", "b"} , Repeats = true};
var sparam2 = (MultiChoiceParam) sparam.ToXmlAndBack();
Assert.AreEqual(sparam.Name, sparam2.Name);
Assert.AreEqual(sparam.Repeats, sparam2.Repeats);
Assert.IsTrue(sparam.Value.SequenceEqual(sparam2.Value));
Assert.IsTrue(sparam.Values.SequenceEqual(sparam2.Values));
}
private void AddFDRParameters(IList<Parameter> list, Dictionary<string, string> parameters,
IList<ParameterDescription> help)
{
string name = MetadataElement.FALSE_DISCOVERY_RATE.Name;
string desc = null;
name = CheckIfDescriptionExists(help, name, ref desc, null);
IList<string> values = new List<string>();
IList<int> selection = new List<int>();
if (parameters != null){
List<string> defaultValues = new List<string>();
if (Constants.getRowName(Utils.parameters.protein_fdr, parameters) != null){
defaultValues.Add(Constants.getRowName(Utils.parameters.protein_fdr, parameters));
}
if (Constants.getRowName(Utils.parameters.psm_fdr, parameters) != null) {
defaultValues.Add(Constants.getRowName(Utils.parameters.psm_fdr, parameters));
}
if (Constants.getRowName(Utils.parameters.site_fdr, parameters) != null) {
defaultValues.Add(Constants.getRowName(Utils.parameters.site_fdr, parameters));
}
int i = 0;
foreach (var temp in parameters){
values.Add(string.Format("{0}={1}", temp.Key, temp.Value));
if (defaultValues.Contains(temp.Key)){
selection.Add(i);
}
i++;
}
}
MultiChoiceParam multi = new MultiChoiceParam(name, selection.ToArray()){Help = desc, Values = values};
list.Add(multi);
}
private void AddCVParameters(IList<Parameter> list, List<CV> cvs, IList<ParameterDescription> help)
{
if (cvs == null || cvs.Count == 0){
cvs = new List<CV>(cv.Headers);
}
string name = MetadataElement.CV.Name;
string desc = null;
name = CheckIfDescriptionExists(help, name, ref desc, null);
MultiChoiceParam param = new MultiChoiceParam(name){
Values = cvs.Select(x => x.FullName ?? x.Label).ToList(),
Help = desc
};
for (int i = 0; i < cvs.Count; i++){
param.AddSelectedIndex(i);
}
list.Add(param);
}
/// <summary>
/// Convert <see cref="BaseLib.Param"/> to <see cref="BaseLibS.Param"/>
/// </summary>
/// <param name="p"></param>
/// <returns></returns>
public static Parameter Convert(Parameter p)
{
if (p.Type == ParamType.Server){
return p;
}
if (p is RegexReplaceParamWf){
RegexReplaceParamWf q = (RegexReplaceParamWf) p;
RegexReplaceParam b = new RegexReplaceParam(q.Name, q.Value.Item1, q.Value.Item2, q.Previews){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is RegexMatchParamWf){
RegexMatchParamWf q = (RegexMatchParamWf) p;
RegexMatchParam b = new RegexMatchParam(q.Name, q.Value, q.Previews){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is BoolParamWf){
BoolParamWf q = (BoolParamWf) p;
BoolParam b = new BoolParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is BoolWithSubParamsWf){
BoolWithSubParamsWf q = (BoolWithSubParamsWf) p;
q.SubParamsFalse?.Convert(Convert);
q.SubParamsTrue?.Convert(Convert);
BoolWithSubParams b = new BoolWithSubParams(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
SubParamsFalse = q.SubParamsFalse,
SubParamsTrue = q.SubParamsTrue,
Default = q.Default,
ParamNameWidth = q.ParamNameWidth,
TotalWidth = q.TotalWidth,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is DictionaryIntValueParamWf){
DictionaryIntValueParamWf q = (DictionaryIntValueParamWf) p;
DictionaryIntValueParam b = new DictionaryIntValueParam(q.Name, q.Value, q.Keys){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is DoubleParamWf){
DoubleParamWf q = (DoubleParamWf) p;
DoubleParam b = new DoubleParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is FileParamWf){
FileParamWf q = (FileParamWf) p;
FileParam b = new FileParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Filter = q.Filter,
ProcessFileName = q.ProcessFileName,
Save = q.Save,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is FolderParamWf){
FolderParamWf q = (FolderParamWf) p;
FolderParam b = new FolderParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is IntParamWf){
IntParamWf q = (IntParamWf) p;
IntParam b = new IntParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is LabelParamWf){
LabelParamWf q = (LabelParamWf) p;
LabelParam b = new LabelParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is MultiChoiceMultiBinParamWf){
MultiChoiceMultiBinParamWf q = (MultiChoiceMultiBinParamWf) p;
MultiChoiceMultiBinParam b = new MultiChoiceMultiBinParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Bins = q.Bins,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is MultiChoiceParamWf){
MultiChoiceParamWf q = (MultiChoiceParamWf) p;
MultiChoiceParam b = new MultiChoiceParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Repeats = q.Repeats,
Values = q.Values,
Default = q.Default,
DefaultSelections = q.DefaultSelections,
DefaultSelectionNames = q.DefaultSelectionNames,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is MultiFileParamWf){
MultiFileParamWf q = (MultiFileParamWf) p;
MultiFileParam b = new MultiFileParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Filter = q.Filter,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is MultiStringParamWf){
MultiStringParamWf q = (MultiStringParamWf) p;
MultiStringParam b = new MultiStringParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is SingleChoiceParamWf){
SingleChoiceParamWf q = (SingleChoiceParamWf) p;
SingleChoiceParam b = new SingleChoiceParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is SingleChoiceWithSubParamsWf){
SingleChoiceWithSubParamsWf q = (SingleChoiceWithSubParamsWf) p;
foreach (Parameters param in q.SubParams){
param?.Convert(Convert);
}
SingleChoiceWithSubParams b = new SingleChoiceWithSubParams(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Values = q.Values,
Default = q.Default,
SubParams = new Parameters[q.SubParams.Count],
ParamNameWidth = q.ParamNameWidth,
TotalWidth = q.TotalWidth,
Url = q.Url
};
for (int i = 0; i < q.SubParams.Count; i++){
b.SubParams[i] = q.SubParams[i];
}
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is StringParamWf){
StringParamWf q = (StringParamWf) p;
StringParam b = new StringParam(q.Name, q.Value){
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
if (p is Ms1LabelParamWf){
Ms1LabelParamWf q = (Ms1LabelParamWf) p;
Ms1LabelParam b = new Ms1LabelParam(q.Name, q.Value){
Values = q.Values,
Multiplicity = q.Multiplicity,
Help = q.Help,
Visible = q.Visible,
Default = q.Default,
Url = q.Url
};
foreach (ValueChangedHandler act in q.GetPropertyChangedHandlers()){
b.ValueChanged += act;
}
return b;
}
throw new Exception("Could not convert ParamWfeter");
}
