public Task <bool> ReadAndAnalyzeMSFile(string path)
{
var IsCompleted = false;
var c = _analysisResults.Count;
var progress = new ReadAndAnalyzeProgressInfo();
var msrun = new MsDataFileImplExtAgg(path);
msrun.GetMsDataSpectrums();
msrun.GetChromatograms(_analysisTargets.Proteins, 0.1);
_analysisResults.Add(msrun);
if (_analysisResults.Count - c == 1)
{
IsCompleted = true;
}
return(Task.FromResult(IsCompleted));
}
private void btnTEST_Click(object sender, EventArgs e)
{
Stopwatch watch = new Stopwatch();
TimeSpan[] TimesToPerform = new TimeSpan[3];
double Toleranse = 0.1;
OpenFileDialog _openDlg = new OpenFileDialog();
_openDlg.Filter = "Thermo(*.raw,|*.raw;)";
if (_openDlg.ShowDialog() == DialogResult.OK)
{
watch.Start();
_msdatafile = new MsDataFileImplExtAgg(_openDlg.FileName);
TimesToPerform[0] = TimeSpan.FromMilliseconds(watch.ElapsedMilliseconds);
}
else
{
return;
}
watch.Reset();
watch.Start();
_msdatafile.GetMsDataSpectrums();
TimesToPerform[1] = TimeSpan.FromMilliseconds(watch.ElapsedMilliseconds);
watch.Reset();
watch.Start();
_msdatafile.GetChromatograms(GetProteinsFromSkyline(), Toleranse);
TimesToPerform[2] = TimeSpan.FromMilliseconds(watch.ElapsedMilliseconds);
MessageBox.Show(String.Format("Read: {0}:{1}; GetSpectrums: {2}:{3}; GetChromatograms: {4}:{5} ",
TimesToPerform[0].Minutes, TimesToPerform[0].Seconds,
TimesToPerform[1].Minutes, TimesToPerform[1].Seconds,
TimesToPerform[2].Minutes, TimesToPerform[2].Seconds));
foreach (var chromatogram in _msdatafile.Chromatograms)
{
var ChromLine = zedGraphControlTest.GraphPane.AddCurve(String.Format("{0} ({1}): [{2}] - {3}", chromatogram.Peptide, chromatogram.IsotopeLabelType, chromatogram.PrecursorMZ, "PosMatch"),
chromatogram.RetentionTimes,
chromatogram.SumOfPositiveMatch,
Color.Green);
ChromLine.Symbol.IsVisible = false;
}
zedGraphControlTest.AxisChange();
zedGraphControlTest.Refresh();
}
private void button7_Click(object sender, EventArgs e)
{
foreach (object drMzFile in cblSelectedFiles.CheckedItems)
{
string _fileName = drMzFile.ToString();
string _fileNameRAW = _fileName.Replace(".mxXML", ".raw");
var msrun = new MsDataFileImplExtAgg(_fileNameRAW);
// msrun.MsDataFile.RunStartTime
MessageBox.Show(msrun.MsDataFile.IsThermoFile.ToString(), "Is Thermo File");
MessageBox.Show(msrun.MsDataFile.IsWatersFile.ToString(), "Is Waters File");
MessageBox.Show(msrun.MsDataFile.RunStartTime.HasValue.ToString(), "RunStartTime.HasValue");
//MessageBox.Show(msrun.MsDataFile. .HasValue.ToString(), "RunStartTime.HasValue");
//string _mzXMLfile = File.ReadAllText(_fileName);
//foreach (ListViewItem itemToSub in lVSubsForSkyline.CheckedItems)
//{
// _mzXMLfile = _mzXMLfile.Replace(itemToSub.SubItems[2].Text, itemToSub.SubItems[3].Text);
//}
//string _directoryNameOnly = Path.GetDirectoryName(_fileName);
//string _newDirectoryName = Path.Combine(_directoryNameOnly, "Skyline");
//if (!Directory.Exists(_newDirectoryName)) Directory.CreateDirectory(_newDirectoryName);
//string _fileNameOnly = Path.GetFileName(_fileName);
//string _newFileName = _newDirectoryName + Path.DirectorySeparatorChar + _fileNameOnly;
//File.WriteAllText(_newFileName, _mzXMLfile);
}
MessageBox.Show("Completed");
}