public void TestSerialization()
{
MoleculeBuilder x1 = CreateObject <MoleculeBuilder>().WithName("Monica.Builder");
x1.IsFloating = true;
x1.QuantityType = QuantityType.Metabolite;
x1.DefaultStartFormula = CreateObject <ConstantFormula>().WithDimension(DimensionLength).WithValue(23.4);
TransportBuilder t1 = CreateObject <TransportBuilder>().WithName("Passive Transport");
IFormula consFormula = CreateObject <ConstantFormula>().WithDimension(DimensionLength).WithValue(5);
IParameter transporterParameter = CreateObject <Parameter>().WithName("Passive Transport Param").WithFormula(consFormula).WithMode(ParameterBuildMode.Property)
.WithDimension(DimensionLength);
t1.AddParameter(transporterParameter);
IFormula f1 = CreateObject <ExplicitFormula>().WithDimension(DimensionLength).WithFormulaString("3*Patty");
IFormulaUsablePath fup = new FormulaUsablePath(new[] { "Patricia" }).WithAlias("Patty").WithDimension(DimensionLength);
f1.AddObjectPath(fup);
IParameter p1 = CreateObject <Parameter>().WithName("Patricia").WithFormula(f1).WithValue(3.1).WithMode(ParameterBuildMode.Property);
IParameter p2 = CreateObject <Parameter>().WithName("Pascal").WithFormula(f1).WithValue(3.2).WithMode(ParameterBuildMode.Local);
IParameter p3 = CreateObject <Parameter>().WithName("Paul").WithFormula(f1).WithValue(3.3);
x1.AddParameter(p1);
x1.AddParameter(p2);
var atbc1 = CreateObject <TransporterMoleculeContainer>().WithName("Tranquilo");
ITransportBuilder atb1 = CreateObject <TransportBuilder>();
atb1.Formula = CreateObject <ConstantFormula>().WithDimension(DimensionLength).WithValue(2.5);
atb1.AddParameter(p3);
atb1.Name = "Tranquilo";
atbc1.AddActiveTransportRealization(atb1);
var atbc2 = CreateObject <TransporterMoleculeContainer>().WithName("Tranquilo2");
ITransportBuilder atb2 = CreateObject <TransportBuilder>();
atb2.Formula = f1;
atb2.Name = "Tranquilo2";
atbc2.AddActiveTransportRealization(atb2);
x1.AddTransporterMoleculeContainer(atbc1);
x1.AddTransporterMoleculeContainer(atbc2);
x1.IsXenobiotic = !x1.IsXenobiotic;
var interactionContainer = CreateObject <InteractionContainer>().WithName("Interactions");
x1.AddInteractionContainer(interactionContainer);
var x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualMoleculeBuilder(x1, x2);
}
protected override void Context()
{
_quantity = A.Fake <IParameter>().WithName("P");
base.Context();
_parameter.Name = "P";
var moleculeBuilder1 = new MoleculeBuilder().WithName("Mol1");
var moleculeBuilder2 = new MoleculeBuilder().WithName("Mol2");
var transporterMolecule1 = new TransporterMoleculeContainer {
TransportName = "TRANSPORT", Name = "TRANSPORTER"
};
var molecule1 = new Container().WithName("Mol1");
molecule1.Add(transporterMolecule1);
var molecule2 = new Container().WithName("Mol2");
var transporterMolecule2 = new TransporterMoleculeContainer {
TransportName = "TRANSPORT", Name = "TRANSPORTER"
};
molecule2.Add(transporterMolecule2);
moleculeBuilder1.AddTransporterMoleculeContainer(transporterMolecule1);
moleculeBuilder2.AddTransporterMoleculeContainer(transporterMolecule2);
var moleculeBuildingBlock = new MoleculeBuildingBlock {
moleculeBuilder1, moleculeBuilder2
};
_buildingBlockInfo.UntypedBuildingBlock = moleculeBuildingBlock;
transporterMolecule1.AddParameter(_parameter);
_quantity.ParentContainer.Name = transporterMolecule1.TransportName;
_quantity.ParentContainer.ParentContainer.Name = moleculeBuilder1.Name;
}
