public static void Save(Madingley.Common.EcologicalParameters ecologicalParameters, string path)
{
using (var writer = new StreamWriter(path))
{
writer.WriteLine("Parameter,Value");
ecologicalParameters.Parameters.ToList().ForEach(kv => writer.WriteLine(String.Format("{0},{1}", kv.Key, kv.Value)));
}
}
public static void ConvertEcologicalParameters(Madingley.Common.EcologicalParameters ecologicalParameters)
{
EcologicalParameters.Parameters = new Dictionary <string, double>(ecologicalParameters.Parameters);
EcologicalParameters.TimeUnits = ecologicalParameters.TimeUnits.ToArray();
}
public static Madingley.Common.Configuration Deserialize(TextReader sr)
{
Func <Newtonsoft.Json.JsonTextReader, Madingley.Common.FunctionalGroupDefinition> JsonReadFunctionalGroupDefinition = (reader) =>
{
var ret = new Madingley.Common.FunctionalGroupDefinition();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Definitions": ret.Definitions = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadString); break;
case "Properties": ret.Properties = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadDouble); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return(ret);
};
Func <Newtonsoft.Json.JsonTextReader, Madingley.Common.FunctionalGroupDefinitions> JsonReadFunctionalGroupDefinitions = (reader) =>
{
var ret = new Madingley.Common.FunctionalGroupDefinitions();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Data": ret.Data = Common.Reader.ReadArray(reader, JsonReadFunctionalGroupDefinition); break;
case "Definitions": ret.Definitions = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
case "Properties": ret.Properties = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return(ret);
};
Func <Newtonsoft.Json.JsonTextReader, Madingley.Common.ScenarioParameter> JsonReadScenarioParameter = (reader) =>
{
var ret = new Madingley.Common.ScenarioParameter();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "ParamString": ret.ParamString = Common.Reader.ReadString(reader); break;
case "ParamDouble1": ret.ParamDouble1 = Common.Reader.ReadDouble(reader); break;
case "ParamDouble2": ret.ParamDouble2 = Common.Reader.ReadDouble(reader); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return(ret);
};
Func <Newtonsoft.Json.JsonTextReader, IDictionary <string, Madingley.Common.ScenarioParameter> > JsonReadKVPScenarioParameter = (reader) =>
{
var ret = new Dictionary <string, Madingley.Common.ScenarioParameter>();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var key = Convert.ToString(reader.Value);
reader.Read();
var value = JsonReadScenarioParameter(reader);
ret.Add(key, value);
}
return(ret);
};
Func <Newtonsoft.Json.JsonTextReader, Madingley.Common.ScenarioParameters> JsonReadScenarioParameters = (reader) =>
{
var ret = new Madingley.Common.ScenarioParameters();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Label": ret.Label = Common.Reader.ReadString(reader); break;
case "SimulationNumber": ret.SimulationNumber = Common.Reader.ReadInt(reader); break;
case "Parameters": ret.Parameters = JsonReadKVPScenarioParameter(reader); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return(ret);
};
Func <Newtonsoft.Json.JsonTextReader, Madingley.Common.EcologicalParameters> JsonReadEcologicalParameters = (reader) =>
{
var ret = new Madingley.Common.EcologicalParameters();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Parameters": ret.Parameters = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadDouble); break;
case "TimeUnits": ret.TimeUnits = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return(ret);
};
var configuration = new Madingley.Common.Configuration();
using (var reader = new Newtonsoft.Json.JsonTextReader(sr))
{
reader.Read();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "GlobalModelTimeStepUnit": configuration.GlobalModelTimeStepUnit = Common.Reader.ReadString(reader); break;
case "NumTimeSteps": configuration.NumTimeSteps = Common.Reader.ReadInt(reader); break;
case "BurninTimeSteps": configuration.BurninTimeSteps = Common.Reader.ReadInt(reader); break;
case "ImpactTimeSteps": configuration.ImpactTimeSteps = Common.Reader.ReadInt(reader); break;
case "RecoveryTimeSteps": configuration.RecoveryTimeSteps = Common.Reader.ReadInt(reader); break;
case "RunCellsInParallel": configuration.RunCellsInParallel = Common.Reader.ReadBoolean(reader); break;
case "RunSimulationsInParallel": configuration.RunSimulationsInParallel = Common.Reader.ReadBoolean(reader); break;
case "RunRealm": configuration.RunRealm = Common.Reader.ReadString(reader); break;
case "DrawRandomly": configuration.DrawRandomly = Common.Reader.ReadBoolean(reader); break;
case "ExtinctionThreshold": configuration.ExtinctionThreshold = Common.Reader.ReadDouble(reader); break;
case "MaxNumberOfCohorts": configuration.MaxNumberOfCohorts = Common.Reader.ReadInt(reader); break;
case "DispersalOnly": configuration.DispersalOnly = Common.Reader.ReadBoolean(reader); break;
case "DispersalOnlyType": configuration.DispersalOnlyType = Common.Reader.ReadString(reader); break;
case "PlanktonDispersalThreshold": configuration.PlanktonDispersalThreshold = Common.Reader.ReadDouble(reader); break;
case "CohortFunctionalGroupDefinitions": configuration.CohortFunctionalGroupDefinitions = JsonReadFunctionalGroupDefinitions(reader); break;
case "StockFunctionalGroupDefinitions": configuration.StockFunctionalGroupDefinitions = JsonReadFunctionalGroupDefinitions(reader); break;
case "ImpactCellIndices": configuration.ImpactCellIndices = Common.Reader.ReadArray(reader, Common.Reader.ReadInt); break;
case "ImpactAll": configuration.ImpactAll = Common.Reader.ReadBoolean(reader); break;
case "ScenarioParameters": configuration.ScenarioParameters = Common.Reader.ReadArray(reader, JsonReadScenarioParameters).ToList(); break;
case "ScenarioIndex": configuration.ScenarioIndex = Common.Reader.ReadInt(reader); break;
case "Simulation": configuration.Simulation = Common.Reader.ReadInt(reader); break;
case "EcologicalParameters": configuration.EcologicalParameters = JsonReadEcologicalParameters(reader); break;
case "FileNames": configuration.FileNames = Common.Reader.ReadArray(reader, Common.Reader.ReadString).ToList(); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
}
return(configuration);
}
public static Madingley.Common.Configuration Deserialize(TextReader sr)
{
Func<Newtonsoft.Json.JsonTextReader, Madingley.Common.FunctionalGroupDefinition> JsonReadFunctionalGroupDefinition = (reader) =>
{
var ret = new Madingley.Common.FunctionalGroupDefinition();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Definitions": ret.Definitions = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadString); break;
case "Properties": ret.Properties = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadDouble); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return ret;
};
Func<Newtonsoft.Json.JsonTextReader, Madingley.Common.FunctionalGroupDefinitions> JsonReadFunctionalGroupDefinitions = (reader) =>
{
var ret = new Madingley.Common.FunctionalGroupDefinitions();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Data": ret.Data = Common.Reader.ReadArray(reader, JsonReadFunctionalGroupDefinition); break;
case "Definitions": ret.Definitions = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
case "Properties": ret.Properties = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return ret;
};
Func<Newtonsoft.Json.JsonTextReader, Madingley.Common.ScenarioParameter> JsonReadScenarioParameter = (reader) =>
{
var ret = new Madingley.Common.ScenarioParameter();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "ParamString": ret.ParamString = Common.Reader.ReadString(reader); break;
case "ParamDouble1": ret.ParamDouble1 = Common.Reader.ReadDouble(reader); break;
case "ParamDouble2": ret.ParamDouble2 = Common.Reader.ReadDouble(reader); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return ret;
};
Func<Newtonsoft.Json.JsonTextReader, IDictionary<string, Madingley.Common.ScenarioParameter>> JsonReadKVPScenarioParameter = (reader) =>
{
var ret = new Dictionary<string, Madingley.Common.ScenarioParameter>();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var key = Convert.ToString(reader.Value);
reader.Read();
var value = JsonReadScenarioParameter(reader);
ret.Add(key, value);
}
return ret;
};
Func<Newtonsoft.Json.JsonTextReader, Madingley.Common.ScenarioParameters> JsonReadScenarioParameters = (reader) =>
{
var ret = new Madingley.Common.ScenarioParameters();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Label": ret.Label = Common.Reader.ReadString(reader); break;
case "SimulationNumber": ret.SimulationNumber = Common.Reader.ReadInt(reader); break;
case "Parameters": ret.Parameters = JsonReadKVPScenarioParameter(reader); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return ret;
};
Func<Newtonsoft.Json.JsonTextReader, Madingley.Common.EcologicalParameters> JsonReadEcologicalParameters = (reader) =>
{
var ret = new Madingley.Common.EcologicalParameters();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "Parameters": ret.Parameters = Common.Reader.ReadKeyValuePairs(reader, Common.Reader.ReadDouble); break;
case "TimeUnits": ret.TimeUnits = Common.Reader.ReadArray(reader, Common.Reader.ReadString); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
return ret;
};
var configuration = new Madingley.Common.Configuration();
using (var reader = new Newtonsoft.Json.JsonTextReader(sr))
{
reader.Read();
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.StartObject);
while (reader.Read() &&
reader.TokenType != Newtonsoft.Json.JsonToken.EndObject)
{
Debug.Assert(reader.TokenType == Newtonsoft.Json.JsonToken.PropertyName);
Debug.Assert(reader.ValueType == typeof(string));
var property = Convert.ToString(reader.Value);
reader.Read();
switch (property)
{
case "GlobalModelTimeStepUnit": configuration.GlobalModelTimeStepUnit = Common.Reader.ReadString(reader); break;
case "NumTimeSteps": configuration.NumTimeSteps = Common.Reader.ReadInt(reader); break;
case "BurninTimeSteps": configuration.BurninTimeSteps = Common.Reader.ReadInt(reader); break;
case "ImpactTimeSteps": configuration.ImpactTimeSteps = Common.Reader.ReadInt(reader); break;
case "RecoveryTimeSteps": configuration.RecoveryTimeSteps = Common.Reader.ReadInt(reader); break;
case "RunCellsInParallel": configuration.RunCellsInParallel = Common.Reader.ReadBoolean(reader); break;
case "RunSimulationsInParallel": configuration.RunSimulationsInParallel = Common.Reader.ReadBoolean(reader); break;
case "RunRealm": configuration.RunRealm = Common.Reader.ReadString(reader); break;
case "DrawRandomly": configuration.DrawRandomly = Common.Reader.ReadBoolean(reader); break;
case "ExtinctionThreshold": configuration.ExtinctionThreshold = Common.Reader.ReadDouble(reader); break;
case "MaxNumberOfCohorts": configuration.MaxNumberOfCohorts = Common.Reader.ReadInt(reader); break;
case "DispersalOnly": configuration.DispersalOnly = Common.Reader.ReadBoolean(reader); break;
case "DispersalOnlyType": configuration.DispersalOnlyType = Common.Reader.ReadString(reader); break;
case "PlanktonDispersalThreshold": configuration.PlanktonDispersalThreshold = Common.Reader.ReadDouble(reader); break;
case "CohortFunctionalGroupDefinitions": configuration.CohortFunctionalGroupDefinitions = JsonReadFunctionalGroupDefinitions(reader); break;
case "StockFunctionalGroupDefinitions": configuration.StockFunctionalGroupDefinitions = JsonReadFunctionalGroupDefinitions(reader); break;
case "ImpactCellIndices": configuration.ImpactCellIndices = Common.Reader.ReadArray(reader, Common.Reader.ReadInt); break;
case "ImpactAll": configuration.ImpactAll = Common.Reader.ReadBoolean(reader); break;
case "ScenarioParameters": configuration.ScenarioParameters = Common.Reader.ReadArray(reader, JsonReadScenarioParameters).ToList(); break;
case "ScenarioIndex": configuration.ScenarioIndex = Common.Reader.ReadInt(reader); break;
case "Simulation": configuration.Simulation = Common.Reader.ReadInt(reader); break;
case "EcologicalParameters": configuration.EcologicalParameters = JsonReadEcologicalParameters(reader); break;
case "FileNames": configuration.FileNames = Common.Reader.ReadArray(reader, Common.Reader.ReadString).ToList(); break;
default: throw new Exception(string.Format("Unexpected property: {0}", property));
}
}
}
return configuration;
}
