private void bStart_Click(object sender, EventArgs e)
{
bStart.Enabled = false;
bStop.Enabled = true;
bStart.Refresh();
bStop.Refresh();
logWriter = new StreamWriter("simulais_log.txt");
logWriter.WriteLine(DateTime.Now);
wsnSimulator = new WsnSimulatorApp();
wsnSimulator.Initializing += new EventHandler <ProgressEventArgs>(simulator_OnProgress);
wsnSimulator.LogEvent += new EventHandler <LogEventArgs>(simulator_LogEvent);
wsnSimulator.SimulationFinished += new EventHandler <EventArgs>(simulator_SimulationFinished);
Scheduler.Dispatching += new Handler(Scheduler_Dispatching);
progressFrm = new ProgressFrm();
progressFrm.Show();
var blockLen = 3;
try
{
wsnSimulator.InitFromTrace(
"../../../NSTraces/Traces-2009-12-23/ntr_ex5.tr",
"../../../NSTraces/nm/ex6_nm4.tr",
blockLen,
1, 1, 1, int.Parse(tbNumOfAPCs.Text), int.Parse(tbNumOfTCells.Text), true);
// initialize the simulator
/*wsnSimulator.Init(
* "../../../NSTraces/Traces-2009-12-23/ntr_ex5R.tr", // self trace path
* "../../../NSTraces/Traces-2009-12-23/ntr_ex6R.tr", // test trace path
* blockLen, // block duration
* 1, 1, 1, int.Parse(tbNumOfAPCs.Text), int.Parse(tbNumOfTCells.Text), true); */
}
catch (Exception ex)
{
MessageBox.Show("Simulator initialization failed:\n\n" + ex.Message + "\n\n" + ex.StackTrace,
"Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
progressFrm.Close();
bStart.Enabled = true;
bStop.Enabled = false;
return;
}
lymphNode = wsnSimulator.LymphNodes[0];
localTissue = wsnSimulator.LocalTissues[0];
progressFrm.Close();
Refresh();
// start the simulation
wsnSimulator.Run();
}
private void Init(List <MolecularPattern> selfPatterns,
List <SimulatorInitEvent> initEvents, SimulatorInitArgs args, bool registerLogger)
{
// create and start local agents
// number of local tissue must be equal to the number of NS nodes
LocalTissues = new List <LocalTissue>(new LocalTissue[args.NumLocals]);
for (int i = 0; i < args.NumLocals; i++)
{
var lt = new LocalTissue();
LocalTissues[i] = lt;
lt.Start();
}
// create, train and start thymus agents
Thymuses = new List <Thymus>(new Thymus[args.NumThymuses]);
for (int i = 0; i < args.NumThymuses; i++)
{
var thymus = new Thymus(args.NumTCells, args.PeptideLen);
thymus.Train(selfPatterns); // train the thymus by self patterns
Thymuses[i] = thymus;
thymus.Start();
}
// create and start bone marrow agents
BoneMarrows = new List <BoneMarrow <T> >(new BoneMarrow <T> [args.NumBoneMarrows]);
for (int i = 0; i < args.NumBoneMarrows; i++)
{
var bm = new BoneMarrow <T>(args.NumAPCs, OnProcessSpamp, OnProcessSdamp, OnProcessAntigen);
BoneMarrows[i] = bm;
bm.Start();
}
// create and start lymph node agents
LymphNodes = new List <LymphNode>(new LymphNode[args.NumLymphNodes]);
for (int i = 0; i < args.NumLymphNodes; i++)
{
var ln = new LymphNode();
LymphNodes[i] = ln;
ln.Start();
}
if (registerLogger)
{
// register logger event
foreach (var tissue in Tissues)
{
tissue.LogEvent += new EventHandler <LogEventArgs>(OnLog);
}
}
// schedule all initial events
foreach (var pair in initEvents.Where(e => e.LocalNodeId < LocalTissues.Count))
{
if (pair.Signal == null)
{
throw new Exception("Event signal cannot be null.");
}
if (pair.LocalNodeId > args.NumLocals)
{
throw new Exception("Event refers to an invalid local node ID. Check number of local nodes and localNodeId of event.");
}
Scheduler.Schedule(LocalTissues[pair.LocalNodeId].HandleSignal, pair.Time, pair.Signal);
}
Initialized = true;
}
