/// <summary>
/// Finds the sequence in the list of IKmer and returns the list of position
/// of the Kmers.
/// </summary>
/// <param name="sequence">Sequence which has to be matched in the list of IKmer.</param>
/// <param name="kmerList">List of IKmer.</param>
/// <returns>Returns the list of position of IKmer.</returns>
private static IList <int> FindCorrespondingMatch(ISequence sequence, KmersOfSequence kmerList)
{
IList <int> positions = null;
string sequenceString = sequence.ToString();
foreach (KmersOfSequence.KmerPositions kmer in kmerList.Kmers)
{
if (sequenceString.Equals(kmerList.KmerToSequence(kmer).ToString()))
{
positions = kmer.Positions;
break;
}
}
return(positions);
}
/// <summary>
/// Finds the sequence in the list of IKmer and returns the list of position
/// of the Kmers.
/// </summary>
/// <param name="sequence">Sequence which has to be matched in the list of IKmer.</param>
/// <param name="kmerList">List of IKmer.</param>
/// <returns>Returns the list of position of IKmer.</returns>
private static IList <long> FindCorrespondingMatch(string sequence, KmersOfSequence kmerList)
{
IList <long> positions = null;
foreach (KmersOfSequence.KmerPositions kmer in kmerList.Kmers)
{
string kmerString = new string(kmerList.KmerToSequence(kmer).Select(a => (char)a).ToArray());
if (sequence.Equals(kmerString))
{
positions = kmer.Positions;
break;
}
}
return(positions);
}