public static void Main(string[] args)
{
string line;
StreamReader source = new StreamReader(Console.OpenStandardInput());
StringBuilder input = new StringBuilder();
while ((line = source.ReadLine()) != null)
{
if (line[0] == '>' && line.Substring(1, 5) == "THREE")
{
break;
}
}
while ((line = source.ReadLine()) != null)
{
char c = line[0];
if (c == '>')
{
break;
}
if (c != ';')
{
input.Append(line.ToUpper());
}
}
KNucleotide kn = new KNucleotide(input.ToString());
input = null;
kn.WriteFrequencies(1);
kn.WriteFrequencies(2);
kn.WriteCount("GGT");
kn.WriteCount("GGTA");
kn.WriteCount("GGTATT");
kn.WriteCount("GGTATTTTAATT");
kn.WriteCount("GGTATTTTAATTTATAGT");
}
public static void Main(string[] args)
{
string line;
StreamReader source = new StreamReader(Console.OpenStandardInput());
var input = new List <string>();
while ((line = source.ReadLine()) != null)
{
if (line[0] == '>' && line.Substring(1, 5) == "THREE")
{
break;
}
}
while ((line = source.ReadLine()) != null)
{
char c = line[0];
if (c == '>')
{
break;
}
if (c != ';')
{
input.Add(line.ToUpper());
}
}
KNucleotide kn = new KNucleotide(input.GetBytes());
input = null;
for (int f = 1; f < 3; f++)
{
kn.WriteFrequencies(f);
}
foreach (var seq in
new[] { "GGT", "GGTA", "GGTATT", "GGTATTTTAATT",
"GGTATTTTAATTTATAGT" })
{
kn.WriteCount(seq);
}
}