public int ProcessQuery(IEnumerable <string> queryStrings, bool printHeader = false)
{
_writer.Write("{");
if (printHeader)
{
string headerString = GetHeader();
_writer.Write(headerString + ",");
}
Utilities.PrintQuerySectionOpening(JasixCommons.PositionsSectionTag, _writer);
var count = 0;
foreach (string queryString in queryStrings)
{
var query = Utilities.ParseQuery(queryString);
query.Chromosome = _jasixIndex.GetIndexChromName(query.Chromosome);
if (!_jasixIndex.ContainsChr(query.Chromosome))
{
continue;
}
count = PrintLargeVariantsExtendingIntoQuery(query);
count += PrintAllVariantsFromQueryBegin(query, count > 0);
}
Utilities.PrintQuerySectionClosing(_writer);
_writer.WriteLine("}");
return(count);
}