private DomainModel.Project CreateProject(CreateProjectCommand project)
{
int vkGroupId = this.groupInfoProvider.GetVkGroupId(project.Url);
VkGroup group = this.vkGroupRepository.GetGroupById(vkGroupId);
bool isGroupExists = group != null;
DomainModel.Project projectToCreate = new DomainModel.Project
{
Title = project.Title,
CreationDate = this.dateTimeHelper.GetDateTimeNow(),
AccountId = project.AccountId,
VkGroup = group ?? new VkGroup
{
Id = vkGroupId,
Name = this.groupInfoProvider.GetVkGroupName(project.Url),
Url = project.Url,
Type = VkGroupType.Group
}
};
using (ITransactionScope transaction = this.unitOfWorkProvider.CreateTransaction().Begin())
{
this.projectRepository.Save(projectToCreate);
if (!isGroupExists)
{
this.AddGroupRelatedData(projectToCreate);
}
transaction.Commit();
}
return(projectToCreate);
}
public void EditUser(UserInfo userInfo)
{
using (this.unitOfWorkProvider.CreateUnitOfWork())
{
Hasher hasher = new Hasher();
using (ITransactionScope transaction = Factory.GetInstance <ITransactionScope>().Begin())
{
User user = this.userRepository.GetUserById(userInfo.Id);
user.FirstName = userInfo.FirstName.Trim();
user.LastName = userInfo.LastName.Trim();
user.Email = userInfo.Email.Trim();
if (!string.IsNullOrWhiteSpace(userInfo.Password))
{
user.Salt = this.CreateRandomSalt();
user.PasswordHash = hasher.ComputeSaltedHash(userInfo.Password.Trim(), user.Salt);
}
this.userRepository.Update(user);
transaction.Commit();
}
}
}
static void Wiff2()
{
string wiffPath = @"C:\Users\david\Documents\BioInfo\47_praktikum\data\task7.wiff";
string runID = "sample=0";
System.Diagnostics.Stopwatch time = new System.Diagnostics.Stopwatch();
time.Start();
Console.Out.WriteLine(time.Elapsed.TotalMinutes);
using (var reader = new WiffFileReader(wiffPath))
using (ITransactionScope txn = reader.BeginTransaction())
{
System.Collections.Generic.IEnumerable <string> Items()
{
foreach (var ms in reader.ReadMassSpectra(runID))
{
//var peaks = reader.ReadSpectrumPeaks(ms.ID);
yield return(ms.ID);
}
}
txn.Commit();
Console.Out.WriteLine(Items().ToArray().Length);
Console.Out.WriteLine(time.Elapsed.TotalMinutes);
}
}
public void AddUser(UserInfo userInfo, int accountId)
{
IAccount account = this.accountRepository.GetAccount(accountId);
using (this.unitOfWorkProvider.CreateUnitOfWork())
{
User user = new User
{
FirstName = userInfo.FirstName.Trim(),
LastName = userInfo.LastName.Trim(),
Email = userInfo.Email.Trim(),
Account = account
};
Hasher hasher = new Hasher();
user.Salt = this.CreateRandomSalt();
user.PasswordHash = hasher.ComputeSaltedHash(userInfo.Password.Trim(), user.Salt);
using (ITransactionScope transaction = Factory.GetInstance <ITransactionScope>().Begin())
{
this.userRepository.Save(user);
transaction.Commit();
}
}
}
static void WiffToSQLite()
{
string wiffPath = @"C:\Work\primaqdev\testdata\C2 Sol SWATH4.wiff";
string mzLitePath = Path.Combine(Path.GetDirectoryName(wiffPath), Path.GetFileNameWithoutExtension(wiffPath) + ".mzlite");
string runID = "sample=0";
if (File.Exists(mzLitePath))
{
File.Delete(mzLitePath);
}
using (IMzLiteDataReader reader = new WiffFileReader(wiffPath))
using (ITransactionScope inTxn = reader.BeginTransaction())
using (MzLiteSQL writer = new MzLiteSQL(mzLitePath))
using (ITransactionScope outTxn = writer.BeginTransaction())
{
foreach (var ms in reader.ReadMassSpectra(runID))
{
var peaks = reader.ReadSpectrumPeaks(ms.ID);
var clonedMS = MzLiteJson.JsonCloneModelItem("#1", ms);
writer.Insert(runID, clonedMS, peaks);
break;
}
foreach (var ms in writer.ReadMassSpectra(runID))
{
var peaks = writer.ReadSpectrumPeaks(ms.ID);
var ms1 = writer.ReadMassSpectrum(ms.ID);
break;
}
outTxn.Commit();
}
}
public void Execute()
{
using (this.unitOfWorkProvider.CreateUnitOfWork())
using (ITransactionScope transaction = this.unitOfWorkProvider.CreateTransaction().Begin())
{
Factory.GetInstance <SavePlacesFromVkProcess>().SaveCountriesAndCities();
transaction.Commit();
}
}
public void Write(string tableName, IBulkDataReader dataReader)
{
// Perform Bulk Copy
SqlConnection sqlConn = _sqlContext.GetConnection();
if (sqlConn.State != ConnectionState.Open)
{
sqlConn.Open();
}
using (ITransactionScope <SqlTransaction> sqlTransaction = _sqlContext.BeginTransaction())
{
Write(tableName, dataReader, sqlConn, sqlTransaction.Current);
sqlTransaction.Commit();
}
}
public void AddAccount(AccountInfo accountInfo)
{
using (this.unitOfWorkProvider.CreateUnitOfWork())
{
Account account = new Account
{
Title = accountInfo.Title,
MaxProjectsCount = accountInfo.MaxProjectsCount,
CanDeleteProjects = accountInfo.CanDeleteProjects
};
using (ITransactionScope transaction = Factory.GetInstance <ITransactionScope>().Begin())
{
this.accountRepository.Save(account);
transaction.Commit();
}
}
}
static void WiffToSQLite()
{
string wiffPath = @"C:\Work\primaqdev\testdata\Für Alex\20160212_MS_DHpsan006.wiff";
string mzLitePath = Path.Combine(Path.GetDirectoryName(wiffPath), Path.GetFileNameWithoutExtension(wiffPath) + ".mzlite");
string runID = "sample=0";
int msLevel;
if (File.Exists(mzLitePath))
{
File.Delete(mzLitePath);
}
using (IMzLiteDataReader reader = new WiffFileReader(wiffPath))
using (ITransactionScope inTxn = reader.BeginTransaction())
using (MzLiteSQL writer = new MzLiteSQL(mzLitePath))
using (ITransactionScope outTxn = writer.BeginTransaction())
{
foreach (var ms in reader.ReadMassSpectra(runID))
{
if (ms.TryGetMsLevel(out msLevel) && msLevel != 1)
{
continue;
}
var peaks = reader.ReadSpectrumPeaks(ms.ID);
//var clonedMS = MzLiteJson.JsonCloneModelItem("#1", ms);
//var max = peaks.Peaks.GroupBy(x => x.Intensity);
writer.Insert(runID, ms, peaks);
//break;
}
//foreach (var ms in writer.ReadMassSpectra(runID))
//{
// var peaks = writer.ReadSpectrumPeaks(ms.ID);
// var ms1 = writer.ReadMassSpectrum(ms.ID);
// break;
//}
outTxn.Commit();
}
}
public void EditAccount(AccountInfo accountInfo)
{
using (this.unitOfWorkProvider.CreateUnitOfWork())
{
IAccount account = this.accountRepository.GetAccount(accountInfo.Id);
if (account == null)
{
throw new PalantirException("Account is not found");
}
using (ITransactionScope transaction = Factory.GetInstance <ITransactionScope>().Begin())
{
account.Title = accountInfo.Title;
account.MaxProjectsCount = accountInfo.MaxProjectsCount;
account.CanDeleteProjects = accountInfo.CanDeleteProjects;
this.accountRepository.Save(account);
transaction.Commit();
}
}
}
public void DeleteUser(int userId)
{
// TODO: Implement multi user logic
using (this.unitOfWorkProvider.CreateUnitOfWork())
{
IProjectRepository projectRepository = this.projectRepositoryFactory();
IList <Project> projects = projectRepository.GetByAccountId(userId);
User user = this.userRepository.GetUserById(userId);
using (ITransactionScope transaction = Factory.GetInstance <ITransactionScope>().Begin())
{
foreach (var project in projects)
{
projectRepository.Delete(project);
}
this.userRepository.Delete(user);
transaction.Commit();
}
}
}
public void Finish()
{
CurrentTransactionScope.Commit();
CurrentTransactionScope.Dispose();
}
