private async Task ProcessTaxonomicUnits(ITISPlantInfoTransformer transformer, PlantInfoProcessor processor, List <TaxonomicUnit> taxonomicUnits)
{
var plantInfos = new List <PlantInfo>();
foreach (var taxonomicUnit in taxonomicUnits.GroupBy(t => t.Tsn))
{
var species = taxonomicUnit.First();
if (species != null)
{
try
{
var plantInfoResults = transformer.Transform(taxonomicUnit);
plantInfos.AddRange(plantInfoResults);
}
catch (Exception ex)
{
_logger.LogError($"Unable to process {taxonomicUnit.Key} {species} {ex.Message}", ex);
}
}
}
var plantInfosResult = await processor.Process(plantInfos);
foreach (var plantInfoResult in plantInfosResult)
{
_logger.LogInformation("CommonName" + ": " + plantInfoResult.CommonName + " ScientificName" + ": " + plantInfoResult.ScientificName +
" PlantInfoId" + ": " + plantInfoResult.PlantInfoId);
}
}
public async Task TestITISPlantInfoProcessor()
{
var transformer = new ITISPlantInfoTransformer();
var itisData = ITISPlantInfoData();
var plantInfos = new List <PlantInfo>();
itisData.ForEach(i => plantInfos.AddRange(transformer.Transform(new List <TaxonomicUnit> {
i
})));
var originRepository = RepositoryMocks.GetStandardMockOriginRepository(new List <Stores.Origin>());
var locationRepository = RepositoryMocks.GetStandardMockLocationRepository(new List <Stores.Location>());
var lifeformRepository = RepositoryMocks.GetStandardMockLifeformRepository(new List <Stores.Lifeform>());
var plantInfoRepository = RepositoryMocks.GetStandardMockPlantInfoRepository(new List <Stores.PlantInfo>());
var plantLocationRepository = RepositoryMocks.GetStandardMockPlantLocationRepository(new List <Stores.PlantLocation>());
var synonymRepository = RepositoryMocks.GetStandardMockSynonymRepository();
var taxonRepository = RepositoryMocks.GetStandardMockTaxonRepository(new List <Stores.Taxon>());
var plantSynonymRepository = new Mock <IRepository <Stores.PlantSynonym> >();
var plantInfoIndex = SearchMocks.GetStandardMockPlantInfoIndex();
var lifeformIndex = SearchMocks.GetStandardMockLifeformIndex();
var locationService = new LocationService(locationRepository.Object);
var originService = new OriginService(originRepository.Object, locationService);
var lifeformService = new LifeformService(lifeformRepository.Object, lifeformIndex.Object);
var plantInfoService = new PlantInfoService(plantInfoRepository.Object, plantLocationRepository.Object, plantInfoIndex.Object);
var synonymService = new SynonymService(synonymRepository.Object);
var taxonService = new TaxonService(taxonRepository.Object, synonymService);
var processor = new PlantInfoProcessor(lifeformService, originService, plantInfoService, taxonService, locationService);
await processor.InitializeOrigin(transformer.Origin);
await processor.InitializeLifeforms();
await processor.InitializeTaxons();
var result = await processor.Process(plantInfos);
result.Count(p => p.ScientificName == "Glandularia quadrangulata").Should().Be(1);
result.Count(p => p.Taxon.Subfamily == null).Should().Be(5);
result.Count(p => p.Taxon.Species == "cremersii").Should().Be(1);
result.Count(p => p.Taxon.Form == "viridifolia").Should().Be(1);
result.Count(p => p.Taxon.Subspecies == "purpurea").Should().Be(1);
result.Count(p => p.Taxon.Variety == "graminea").Should().Be(1);
result.Where(p => p.Locations != null).SelectMany(p => p.Locations).Count().Should().Be(3);
result.Where(p => p.Locations != null).SelectMany(p => p.Locations).Count(l => l.Status == LocationStatus.Native).Should().Be(3);
result.Select(p => p.Origin).DistinctBy(o => o.OriginId).Count().Should().Be(5);
}
public void TestITISPlantInfoTransformer()
{
var transformer = new ITISPlantInfoTransformer();
var itisData = ITISPlantInfoData();
var result = new List <PlantInfo>();
itisData.ForEach(i => result.AddRange(transformer.Transform(new List <TaxonomicUnit> {
i
})));
result.Count(p => p.ScientificName == "Glandularia quadrangulata").Should().Be(1);
result.Count(p => p.Taxon.Subfamily == null).Should().Be(6);
result.Count(p => p.Taxon.Species == "cremersii").Should().Be(2);
result.Count(p => p.Taxon.Form == "viridifolia").Should().Be(2);
result.Count(p => p.Taxon.Subspecies == "purpurea").Should().Be(1);
result.Count(p => p.Taxon.Variety == "graminea").Should().Be(1);
result.Where(p => p.Locations != null).SelectMany(p => p.Locations).Count().Should().Be(3);
result.SelectMany(p => p.Locations).DistinctBy(l => l.Location.Region).Count().Should().Be(1);
result.Select(p => p.Origin).Count().Should().Be(6);
}