public virtual void Run(int scan)
{
ISpectrum spectrum = spectrumRunner.GetSpectrum(scan);
if (spectrum.GetMSnOrder() == 1)
{
monoRunner.SetMS1Spectrum(spectrum);
}
else if ((spectrum as ISpectrumMSn).GetActivation() == TypeOfMSActivation.CID)
{
specProcessor.Process(spectrum);
List <IGlycoPeptide> glycoPeptides = null;
if (monoRunner.GetMS1Spectrum() == null)
{
glycoPeptides = precursorMatcher.Match(spectrum);
}
else
{
monoRunner.Run(spectrum as ISpectrumMSn);
glycoPeptides = precursorMatcher.Match(spectrum, monoRunner.GetMonoMass());
}
searchWorker.Search(spectrum, glycoPeptides);
resultTable[scan] = searchWorker.GetResult();
}
}
public virtual void Run(int scan)
{
ISpectrum spectrum = spectrumRunner.GetSpectrum(scan);
if (spectrum.GetMSnOrder() == 1)
{
monoRunner.SetMS1Spectrum(spectrum);
}
else if ((spectrum as ISpectrumMSn).GetActivation() == TypeOfMSActivation.ETD)
{
specProcessor.Process(spectrum);
List <IGlycoPeptide> glycoPeptides = null;
if (monoRunner.GetMS1Spectrum() == null)
{
glycoPeptides = precursorMatcher.Match(spectrum);
}
else
{
monoRunner.Run(spectrum as ISpectrumMSn);
glycoPeptides = precursorMatcher.Match(spectrum, monoRunner.GetMonoMass());
}
searchWorker.Search(spectrum, glycoPeptides);
resultTable[scan] = searchWorker.GetResult();
(discover as IGlycoPeptideScoreResultFDR).AddResult(resultTable[scan]);
//fdr
double mass = (spectrum as ISpectrumMSn).GetParentMZ() + pesudoMZ / (spectrum as ISpectrumMSn).GetParentCharge();
glycoPeptides = precursorMatcher.Match(spectrum, mass);
searchWorker.Search(spectrum, glycoPeptides);
resultFDRTable[scan] = searchWorker.GetResult();
(discover as IGlycoPeptideScoreResultFDR).AddFDRResult(resultFDRTable[scan]);
}
}