public static void ConvertFromOneFormatToAnother(string inputFileName, string outputFileName, ISequenceFormatter targetFormatter)
{
var parser = SequenceParsers.FindParserByFileName(inputFileName);
var sequenceList = parser.Parse();
var sequences = Helper.ConvertIenumerableToList(sequenceList);
targetFormatter.Open(outputFileName);
foreach (var sequence in sequences)
{
targetFormatter.Write(sequence);
}
targetFormatter.Close();
targetFormatter.Dispose();
}
static void Main(string[] args)
{
if (args.Length != 2)
{
Console.WriteLine("Need source and destination filenames.");
return;
}
string sourceFilename = args[0];
string destFilename = args[1];
ISequenceParser parser = SequenceParsers.FindParserByFileName(sourceFilename);
if (parser == null)
{
parser = SequenceParsers.All.FirstOrDefault(
sp => sp.SupportedFileTypes.Contains(Path.GetExtension(sourceFilename)));
if (parser == null)
{
Console.WriteLine("Failed to locate parser for {0}", sourceFilename);
return;
}
parser.Open(sourceFilename);
}
ISequenceFormatter formatter = SequenceFormatters.FindFormatterByFileName(destFilename);
if (formatter == null)
{
formatter = SequenceFormatters.All.FirstOrDefault(
sp => sp.SupportedFileTypes.Contains(Path.GetExtension(destFilename)));
if (formatter == null)
{
Console.WriteLine("Failed to locate formatter for {0}", destFilename);
return;
}
formatter.Open(destFilename);
}
foreach (var sequence in parser.Parse())
{
formatter.Write(sequence);
}
parser.Close();
formatter.Close();
}
public static void ConvertFromOneFormatToAnother(string inputFileName, string outputFileName, ISequenceFormatter targetFormatter)
{
var parser = SequenceParsers.FindParserByFileName(inputFileName);
var sequenceList = parser.Parse();
var sequences = Helper.ConvertIenumerableToList(sequenceList);
targetFormatter.Open(outputFileName);
foreach (var sequence in sequences)
{
targetFormatter.Write(sequence);
}
targetFormatter.Close();
targetFormatter.Dispose();
}
