public LipophilicityGroupPresenter(ILipophilicityGroupView view, ICompoundAlternativeTask compoundAlternativeTask,
IRepresentationInfoRepository representationRepo,
IParameterGroupAlternativeToLipophilicityAlternativeDTOMapper lipophilicityAlternativeDTOMapper, IDialogCreator dialogCreator) :
base(view, representationRepo, compoundAlternativeTask, dialogCreator, CoreConstants.Groups.COMPOUND_LIPOPHILICITY)
{
_lipophilicityAlternativeDTOMapper = lipophilicityAlternativeDTOMapper;
}
public CompoundTeXBuilder(ITeXBuilderRepository builderRepository, IReportGenerator reportGenerator, ILazyLoadTask lazyLoadTask,
IRepresentationInfoRepository representationRepository, ICompoundAlternativeTask compoundAlternativeTask)
: base(builderRepository, reportGenerator, lazyLoadTask)
{
_representationRepository = representationRepository;
_compoundAlternativeTask = compoundAlternativeTask;
}
protected override void Context()
{
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_reportGenerator = A.Fake <IReportGenerator>();
_treeNodeFactory = new TreeNodeFactoryForSpecs();
sut = new ParameterContainerToTreeNodeMapper(_treeNodeFactory, _representationInfoRepository);
}
protected CompoundParameterGroupPresenter(TView view, IRepresentationInfoRepository representationInfoRepository, string groupName, bool needsCaption = true) : base(view)
{
if (needsCaption)
{
View.Caption = representationInfoRepository.DisplayNameFor(RepresentationObjectType.GROUP, groupName);
}
}
public DistributionDataCreator(IBinIntervalsCreator binIntervalsCreator, IRepresentationInfoRepository representationInfoRepository, IEntityPathResolver entityPathResolver, ICoreUserSettings userSettings)
{
_binIntervalsCreator = binIntervalsCreator;
_representationInfoRepository = representationInfoRepository;
_entityPathResolver = entityPathResolver;
_userSettings = userSettings;
}
public PKSimPathToPathElementsMapper(IRepresentationInfoRepository representationInfoRepository, IEntityPathResolver entityPathResolver) : base(entityPathResolver)
{
_representationInfoRepository = representationInfoRepository;
//Format is (Fraction of dose-DRUG_NAME)-Liver-COMPARTMENT
var fractionOfDoseLiverObserverPattern = $@"(?<{OBSERVER_NAME}>{CoreConstants.Observer.FRACTION_OF_DOSE}{CoreConstants.COMPOSITE_SEPARATOR}\w*){CoreConstants.COMPOSITE_SEPARATOR}{CoreConstants.Organ.Liver}{CoreConstants.COMPOSITE_SEPARATOR}\w*";
_fractionOfDoseLiverRegex = new Regex(fractionOfDoseLiverObserverPattern);
}
protected override void Context()
{
_individual = DomainHelperForSpecs.CreateIndividual();
_representationInfoRep = A.Fake <IRepresentationInfoRepository>();
_quantityPathMapper = A.Fake <IQuantityPathToQuantityDisplayPathMapper>();
sut = new Services.FullPathDisplayResolver(_quantityPathMapper, _representationInfoRep);
}
protected override void Context()
{
_dimensionRepository = A.Fake <IDimensionRepository>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_observedcurveDataMapper = A.Fake <IDataRepositoryToObservedCurveDataMapper>();
_statisticalAnalysis = new PopulationStatisticalAnalysis();
_genderField = ChartDataHelperForSpecs.CreateGenderField();
_statisticalAnalysis.Add(_genderField);
_statisticalAnalysis.Add(_outputFieldVenousBloodPlasma);
_statisticalAnalysis.Add(_outputFieldLiverCell);
_predefinedStatisticalAggregation = new PredefinedStatisticalAggregation {
Selected = true
};
_percentileStatisticalAggregation = new PercentileStatisticalAggregation {
Selected = false, Percentile = 50
};
_statisticalAnalysis.AddStatistic(_predefinedStatisticalAggregation);
_statisticalAnalysis.AddStatistic(_percentileStatisticalAggregation);
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_predefinedStatisticalAggregation)).Returns(_singlecurveId);
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_percentileStatisticalAggregation)).Returns(_percentileId);
_statisticalDataCalculator = new StatisticalDataCalculator();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
sut = new TimeProfileChartDataCreator(_dimensionRepository, _pivotResultCreator, _representationInfoRepository,
_statisticalDataCalculator, _lazyLoadTask, _observedcurveDataMapper);
}
protected override void Context()
{
_compound = new Compound();
_view = A.Fake <ICompoundProcessesView>();
_commandRegister = A.Fake <ICommandCollector>();
A.CallTo(() => _view.TreeView).Returns(A.Fake <IUxTreeView>());
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_partialProcessNodeMapper = A.Fake <IPartialProcessToTreeNodeMapper>();
_compoundProcessPresenter = A.Fake <ICompoundProcessPresenter>();
_compoundEnzymaticProcessPresenter = A.Fake <IEnzymaticCompoundProcessPresenter>();
_treeNodeFactory = new TreeNodeFactoryForSpecs();
_contextMenuFactory = A.Fake <ITreeNodeContextMenuFactory>();
_entityTask = A.Fake <IEntityTask>();
_partialProcessesNode = new RootNode(PKSimRootNodeTypes.CompoundMetabolizingEnzymes);
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper = A.Fake <ICompoundParameterNodeTypeToCompoundParameterGroupPresenterMapper>();
_dialogCreator = A.Fake <IDialogCreator>();
_noItemInSelectionPresenter = A.Fake <INoItemInSelectionPresenter>();
sut = new CompoundProcessesPresenter(_view, _compoundProcessTask, _partialProcessNodeMapper, _treeNodeFactory,
_contextMenuFactory, _compoundProcessPresenter, _entityTask, _dialogCreator, _noItemInSelectionPresenter,
_compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper, _compoundEnzymaticProcessPresenter,
new PartialProcessToRootNodeTypeMapper(), new SystemicProcessToRootNodeTypeMapper());
sut.InitializeWith(_commandRegister);
A.CallTo(() => _view.TreeView.NodeById(PKSimRootNodeTypes.CompoundMetabolizingEnzymes.Id)).Returns(_partialProcessesNode);
}
public FlatProcessToCompoundProcessMapper(IObjectBaseFactory entityBaseFactory,
ISpeciesRepository speciesRepository, IRepresentationInfoRepository representationInfoRepository)
{
_entityBaseFactory = entityBaseFactory;
_speciesRepository = speciesRepository;
_representationInfoRepository = representationInfoRepository;
}
public IntestinalPermeabilityGroupPresenter(IPermeabilityGroupView view, ICompoundAlternativeTask compoundAlternativeTask,
IRepresentationInfoRepository representationRepo,
IParameterGroupAlternativeToPermeabilityAlternativeDTOMapper permeabilityAlternativeDTOMapper,
ICalculatedParameterValuePresenter calculatedParameterValuePresenter, IDialogCreator dialogCreator) :
base(view, compoundAlternativeTask, representationRepo, permeabilityAlternativeDTOMapper, calculatedParameterValuePresenter, dialogCreator, CoreConstants.Groups.COMPOUND_INTESTINAL_PERMEABILITY)
{
}
protected override void Context()
{
_view = A.Fake <IAdvancedParameterDistributionView>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
_parametersPresenter = A.Fake <IPopulationParameterGroupsPresenter>();
_popParameterDistributionPresenter = A.Fake <IPopulationDistributionPresenter>();
_population = A.Fake <Population>();
_projectChangedNotifier = A.Fake <IProjectChangedNotifier>();
_gender1 = A.Fake <Gender>().WithName("Gender1");
_gender2 = A.Fake <Gender>().WithName("Gender2");
A.CallTo(() => _population.AllGenders()).Returns(new[] { _gender1, _gender2 });
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_gender1)).Returns("Display1");
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_gender2)).Returns("Display2");
_allParameters = new List <IParameter>();
_allParametersCache = new PathCacheForSpecs <IParameter>();
A.CallTo(() => _population.AllVectorialParameters(_entityPathResolver)).Returns(_allParameters);
A.CallTo(() => _population.AllParameters(_entityPathResolver)).Returns(_allParametersCache);
A.CallTo(() => _popParameterDistributionPresenter.Plot(_population, A <IParameter> ._, A <DistributionSettings> ._, A <IDimension> ._, A <Unit> ._))
.Invokes(x => _settings = x.GetArgument <DistributionSettings>(2));
sut = new PopulationAdvancedParameterDistributionPresenter(_view, _parametersPresenter,
_representationInfoRepository, _entityPathResolver, _popParameterDistributionPresenter, _projectChangedNotifier);
}
protected override void Context()
{
_view = A.Fake <ISimulationModelSelectionView>();
_categoryCalculationMethodDTOMapper = A.Fake <ICalculationMethodToCategoryCalculationMethodDTOMapper>();
_modelPropertiesTask = A.Fake <IModelPropertiesTask>();
_modelConfigurationRepository = A.Fake <IModelConfigurationRepository>();
_modelPropertiesMapper = A.Fake <IModelConfigurationDTOToModelPropertiesMapper>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_simulation = A.Fake <Simulation>();
_species = A.Fake <Species>();
_individual = A.Fake <Individual>();
_modelProperties = A.Fake <ModelProperties>();
_modelConfiguration = A.Fake <ModelConfiguration>();
_modelConfiguration.ModelName = "4Comp";
_originData = new OriginData();
_modelProperties.ModelConfiguration = _modelConfiguration;
_simulation.ModelProperties = _modelProperties;
_simulation.ModelConfiguration = _modelConfiguration;
A.CallTo(() => _simulation.BuildingBlock <ISimulationSubject>()).Returns(_individual);
_individual.OriginData = _originData;
_originData.Species = _species;
A.CallTo(() => _modelPropertiesTask.Update(A <ModelProperties> ._, A <ModelProperties> ._, _originData)).Returns(_modelProperties);
sut = new SimulationModelSelectionPresenter(_view, _modelConfigurationRepository, _modelPropertiesTask, _modelPropertiesMapper, _representationInfoRepository, _categoryCalculationMethodDTOMapper);
}
protected override void Context()
{
_view = A.Fake <IObjectBaseView>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
sut = new ParameterAlternativeNamePresenter(_view, _representationInfoRepository);
_parameterAlternativeGroup = new ParameterAlternativeGroup().WithName("Group");
}
public PopulationRepository(IFlatPopulationRepository flatPopultionRepository, IFlatPopulationToPopulationMapper flatPopMapper,
IRepresentationInfoRepository representationInfoRepository, ICoreUserSettings userSettings)
{
_flatPopultionRepository = flatPopultionRepository;
_flatPopMapper = flatPopMapper;
_representationInfoRepository = representationInfoRepository;
_userSettings = userSettings;
}
public SpeciesRepository(IFlatSpeciesRepository flatSpeciesRepository, IFlatSpeciesToSpeciesMapper flatSpeciesMapper,
ICoreUserSettings userSettings, IRepresentationInfoRepository representationInfoRepository)
{
_flatSpeciesRepository = flatSpeciesRepository;
_flatSpeciesMapper = flatSpeciesMapper;
_userSettings = userSettings;
_representationInfoRepository = representationInfoRepository;
}
protected override void Context()
{
_view = A.Fake <IEventSettingsView>();
_eventGroupRepository = A.Fake <IEventGroupRepository>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_eventParametersPresenter = A.Fake <IParametersByGroupPresenter>();
sut = new EventSettingsPresenter(_view, _eventGroupRepository, _representationInfoRepository, _eventParametersPresenter);
}
public CompoundProcessPresenter(ICompoundProcessView view, IParametersByGroupPresenter parametersPresenter,
IEntityTask entityTask, ISpeciesRepository speciesRepository,
IRepresentationInfoRepository representationInfoRepository,
ICompoundProcessToCompoundProcessDTOMapper compoundProcessDTOMapper,
ICompoundProcessTask compoundProcessTask)
: base(view, parametersPresenter, entityTask, speciesRepository, representationInfoRepository, compoundProcessDTOMapper, compoundProcessTask)
{
}
public TimeProfileChartDataCreator(IDimensionRepository dimensionRepository, IPivotResultCreator pivotResultCreator, IRepresentationInfoRepository representationInfoRepository,
IStatisticalDataCalculator statisticalDataCalculator, ILazyLoadTask lazyLoadTask, IDataRepositoryToObservedCurveDataMapper observedCurveDataMapper)
: base(dimensionRepository, pivotResultCreator)
{
_representationInfoRepository = representationInfoRepository;
_statisticalDataCalculator = statisticalDataCalculator;
_lazyLoadTask = lazyLoadTask;
_observedCurveDataMapper = observedCurveDataMapper;
}
public CompoundTypeGroupPresenter(ICompoundTypeGroupView view, IRepresentationInfoRepository representationInfoRepository,
ICompoundToCompoundTypeDTOMapper dtoMapper, IParameterTask parameterTask, IEntityPathResolver entityPathResolver)
: base(view, representationInfoRepository, CoreConstants.Groups.COMPOUND_PKA)
{
_dtoMapper = dtoMapper;
_parameterTask = parameterTask;
_entityPathResolver = entityPathResolver;
ShowFavorites = false;
}
public EventMarkdownBuilder(
IMarkdownBuilderRepository markdownBuilderRepository,
IEventGroupRepository eventGroupRepository,
IRepresentationInfoRepository representationInfoRepository
) : base(markdownBuilderRepository)
{
_eventGroupRepository = eventGroupRepository;
_representationInfoRepository = representationInfoRepository;
}
public EventSettingsPresenter(IEventSettingsView view, IEventGroupRepository eventGroupRepository,
IRepresentationInfoRepository representationInfoRepository, IParametersByGroupPresenter eventParametersPresenter)
: base(view)
{
_eventGroupRepository = eventGroupRepository;
_representationInfoRepository = representationInfoRepository;
_eventParametersPresenter = eventParametersPresenter;
_view.AddParameterView(_eventParametersPresenter.View);
}
protected CompoundParameterGroupWithAlternativePresenter(TView view, IRepresentationInfoRepository representationRepository, ICompoundAlternativeTask compoundAlternativeTask, IDialogCreator dialogCreator, string groupName)
: base(view)
{
_dialogCreator = dialogCreator;
_compoundAlternativeTask = compoundAlternativeTask;
_dialogCreator = dialogCreator;
_parameterGroupName = groupName;
View.Caption = representationRepository.DisplayNameFor(RepresentationObjectType.GROUP, _parameterGroupName);
}
protected override void Context()
{
_view = A.Fake <IPopulationParameterDistributionView>();
_distributionDataCreator = A.Fake <IDistributionDataCreator>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_displayUnitRetriever = A.Fake <IDisplayUnitRetriever>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
sut = new PopulationDistributionPresenter(_view, _distributionDataCreator, _representationInfoRepository, _displayUnitRetriever, _pkParameterRepository);
}
public MolWeightGroupPresenter(IMolWeightGroupView view, IRepresentationInfoRepository representationInfoRepository, ICompoundToMolWeightDTOMapper molWeightDTOMapper,
IMolWeightHalogensPresenter molWeightHalogensPresenter, IParameterTask parameterTask) :
base(view, representationInfoRepository, CoreConstants.Groups.COMPOUND_MW)
{
_molWeightDTOMapper = molWeightDTOMapper;
_molWeightHalogensPresenter = molWeightHalogensPresenter;
_parameterTask = parameterTask;
_view.SetHalogensView(_molWeightHalogensPresenter.View);
_molWeightHalogensPresenter.StatusChanged += OnStatusChanged;
}
public OriginDataReportBuilder(
IReportGenerator reportGenerator,
IDimensionRepository dimensionRepository,
IRepresentationInfoRepository representationInfoRepository)
{
_reportGenerator = reportGenerator;
_dimensionRepository = dimensionRepository;
_representationInfoRepository = representationInfoRepository;
_formatter = new NumericFormatter <double>(NumericFormatterOptions.Instance);
}
public FractionUnboundGroupPresenter(IFractionUnboundGroupView view, IRepresentationInfoRepository representationRepository,
ICompoundAlternativeTask compoundAlternativeTask,
IParameterGroupAlternativeToFractionUnboundAlternativeDTOMapper fractionUnboundAlternativeDTOMapper,
ISpeciesRepository speciesRepository, IDialogCreator dialogCreator, IParameterTask parameterTask) :
base(view, representationRepository, compoundAlternativeTask, dialogCreator, CoreConstants.Groups.COMPOUND_FRACTION_UNBOUND)
{
_fractionUnboundAlternativeDTOMapper = fractionUnboundAlternativeDTOMapper;
_speciesRepository = speciesRepository;
_parameterTask = parameterTask;
}
protected override void Context()
{
_userSettings = A.Fake <ICoreUserSettings>();
_userSettings.NumberOfBins = 2;
_userSettings.NumberOfIndividualsPerBin = 100;
_representationInfoRep = A.Fake <IRepresentationInfoRepository>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
_binIntervalCreator = new BinIntervalsCreator(_userSettings);
sut = new DistributionDataCreator(_binIntervalCreator, _representationInfoRep, _entityPathResolver, _userSettings);
}
public GlobalPKAnalysisPresenter(IGlobalPKAnalysisView view, IGlobalPKAnalysisTask globalPKAnalysisTask,
IGlobalPKAnalysisToGlobalPKAnalysisDTOMapper globalPKAnalysisDTOMapper, IHeavyWorkManager heavyWorkManager, IRepresentationInfoRepository representationInfoRepository, IPresentationSettingsTask presentationSettingsTask) : base(view)
{
_globalPKAnalysisTask = globalPKAnalysisTask;
_globalPKAnalysisDTOMapper = globalPKAnalysisDTOMapper;
_heavyWorkManager = heavyWorkManager;
_representationInfoRepository = representationInfoRepository;
_presentationSettingsTask = presentationSettingsTask;
_settings = new DefaultPresentationSettings();
}
public ParametersByGroupPresenter(IParametersByGroupView view, IEditParameterPresenterTask editParameterPresenterTask, IParameterTask parameterTask,
IParameterToParameterDTOMapper mapper, IRepresentationInfoRepository representationInfoRepository,
IParameterContextMenuFactory contextMenuFactory)
: base(view, editParameterPresenterTask, parameterTask)
{
_mapper = mapper;
_representationInfoRepository = representationInfoRepository;
_contextMenuFactory = contextMenuFactory;
ShowFavorites = false;
}
