protected override void Context()
{
_reactionMapper = A.Fake <IReactionBuilderToReactionMapper>();
_keywordReplacerTask = A.Fake <IKeywordReplacerTask>();
_containerTask = A.Fake <IContainerTask>();
_parameterMapper = A.Fake <IParameterBuilderCollectionToParameterCollectionMapper>();
sut = new ReactionCreator(_reactionMapper, _keywordReplacerTask, _containerTask, _parameterMapper);
_model = A.Fake <IModel>();
_reactionBuilder = A.Fake <IReactionBuilder>();
_reactionBuilder.ContainerCriteria = new DescriptorCriteria();
_reactionBuilder.Description = "A great description";
_reactionBuilder.Name = "Reaction";
_educt1 = A.Fake <IReactionPartnerBuilder>();
_educt1.MoleculeName = "sp1";
_educt2 = A.Fake <IReactionPartnerBuilder>();
_educt2.MoleculeName = "sp2";
_product1 = A.Fake <IReactionPartnerBuilder>();
_product1.MoleculeName = "sp3";
A.CallTo(() => _reactionBuilder.Educts).Returns(new[] { _educt1, _educt2 });
A.CallTo(() => _reactionBuilder.Products).Returns(new[] { _product1 });
A.CallTo(() => _reactionBuilder.ModifierNames).Returns(new[] { "modifier" });
_buildConfiguration = A.Fake <IBuildConfiguration>();
_rootContainer = new Container().WithMode(ContainerMode.Physical);
_model.Root = _rootContainer;
_globalContainer = new Container();
_reaction = A.Fake <IReaction>().WithName(_reactionBuilder.Name);
A.CallTo(() => _reactionMapper.MapFromLocal(A <IReactionBuilder> ._, A <IContainer> ._, _buildConfiguration)).Returns(_reaction);
A.CallTo(() => _containerTask.CreateOrRetrieveSubContainerByName(_rootContainer, _reactionBuilder.Name)).Returns(_globalContainer);
}
protected override void Context()
{
base.Context();
_reactionPartnerBuilder = new ReactionPartnerBuilder("moleculeName", 1.0);
_reactionPartnerDTO = new ReactionPartnerBuilderDTO(_reactionPartnerBuilder);
sut.InitializeWith(_commandCollector);
sut.Edit(_reactionBuilderDTO, _reactionBuildingBlock);
}
protected override void Context()
{
base.Context();
_reactionPartnerBuilder = A.Fake <IReactionPartnerBuilder>();
_container = new Container();
_buildConfiguration = A.Fake <IBuildConfiguration>();
_reactionPartnerBuilder.MoleculeName = "Drug";
_reactionPartnerBuilder.StoichiometricCoefficient = 1.1;
}
protected override void Context()
{
base.Context();
_reactionPartnerBuilder = new ReactionPartnerBuilder("moleculeName", 2.0);
_reactionPartnerDTO = new ReactionPartnerBuilderDTO(_reactionPartnerBuilder);
sut.Edit(_reactionBuilderDTO, _reactionBuildingBlock);
}
protected EditReactionPartnerCommand(IReactionBuilder reaction, IReactionPartnerBuilder reactionPartner, IMoBiReactionBuildingBlock buildingBlock) : base(buildingBlock)
{
_reaction = reaction;
_reactionId = reaction.Id;
_reactionPartner = reactionPartner;
_isEduct = reaction.Educts.Contains(reactionPartner);
ObjectType = ObjectTypes.Reaction;
CommandType = AppConstants.Commands.EditCommand;
}
public void AddProduct(IReactionPartnerBuilder product)
{
if (_products.Contains(product))
{
throw new NotUniqueNameException(product.MoleculeName, Name);
}
_products.Add(product);
OnChanged();
}
/// <summary>
/// Maps from input to output using data provided by local.
/// </summary>
/// <param name="reactionPartnerBuilder">The reaction partner builder used to create reaction partner from</param>
/// <param name="container">The container there we found used molecules amounts in, should be normally the same as there the reaction is created</param>
/// <param name="buildConfiguration">build configuration used to create model</param>
public IReactionPartner MapFromLocal(IReactionPartnerBuilder reactionPartnerBuilder, IContainer container, IBuildConfiguration buildConfiguration)
{
var moleculeAmount = container.GetSingleChildByName <IMoleculeAmount>(reactionPartnerBuilder.MoleculeName);
if (moleculeAmount == null)
{
throw new MissingMoleculeAmountException(container.Name, reactionPartnerBuilder.MoleculeName);
}
return(new ReactionPartner(reactionPartnerBuilder.StoichiometricCoefficient, moleculeAmount));
}
protected override void Context()
{
_newCoefficient = 2;
_oldCoefficient = 5;
_reaction = new ReactionBuilder().WithId("R");
_reactionPartner = new ReactionPartnerBuilder("A", _oldCoefficient);
_buildingBlock = new MoBiReactionBuildingBlock();
_context = A.Fake <IMoBiContext>();
A.CallTo(() => _context.Get <IReactionBuilder>(_reaction.Id)).Returns(_reaction);
AddPartnerToReaction();
sut = new EditReactionPartnerStoichiometricCoefficientCommand(_newCoefficient, _reaction, _reactionPartner, _buildingBlock);
}
private IContextMenu createFor(ReactionPartnerBuilderDTO reactionPartnerDTO, IReactionProductsPresenter presenter)
{
var reactionBuilder = presenter.Subject.DowncastTo <IReactionBuilder>();
IReactionPartnerBuilder reactionPartnerBuilder = null;
if (reactionPartnerDTO != null)
{
reactionPartnerBuilder = reactionBuilder.Products.FirstOrDefault(product => product.MoleculeName.Equals(reactionPartnerDTO.MoleculeName));
}
return(new ContextMenuForProductBuilder(reactionBuilder, reactionPartnerBuilder));
}
protected override void Context()
{
_moleculeDimension = A.Fake <IDimension>();
_kinetic = new ExplicitFormula();
_reaction = new ReactionBuilder {
Formula = _kinetic
};
_reactionBuildingBlock = A.Fake <IMoBiReactionBuildingBlock>();
_reactionBuildingBlock.DiagramManager = A.Fake <IMoBiReactionDiagramManager>();
_reactionPartner = new ReactionPartnerBuilder("A", 1);
sut = new AddReactionPartnerToEductCollection(_reactionBuildingBlock, _reactionPartner, _reaction);
_context = A.Fake <IMoBiContext>();
_dimensionRetriever = A.Fake <IReactionDimensionRetriever>();
A.CallTo(() => _context.Resolve <IAliasCreator>()).Returns(new AliasCreator());
A.CallTo(() => _context.Resolve <IReactionDimensionRetriever>()).Returns(_dimensionRetriever);
A.CallTo(() => _context.Resolve <IObjectPathFactory>()).Returns(new ObjectPathFactory(new AliasCreator()));
A.CallTo(() => _dimensionRetriever.MoleculeDimension).Returns(_moleculeDimension);
}
public void RemoveEduct(IReactionPartnerBuilder educt) => _educts.Remove(educt);
public EditReactionPartnerMoleculeNameCommand(string newMoleculeName, IReactionBuilder reaction, IReactionPartnerBuilder reactionPartner, IMoBiReactionBuildingBlock buildingBlock) :
base(reaction, reactionPartner, buildingBlock)
{
_newMoleculeName = newMoleculeName;
Description = AppConstants.Commands.EditDescription(ObjectType, _isEduct ? ObjectTypes.Educt : ObjectTypes.Product, _reactionPartner.MoleculeName, newMoleculeName, _reaction.Name);
}
public EditReactionPartnerStoichiometricCoefficientCommand(double newCoefficient, IReactionBuilder reaction, IReactionPartnerBuilder reactionPartner, IMoBiReactionBuildingBlock buildingBlock) : base(reaction, reactionPartner, buildingBlock)
{
_newCoefficient = newCoefficient;
_oldCoefficient = reactionPartner.StoichiometricCoefficient;
_moleculeName = reactionPartner.MoleculeName;
Description = AppConstants.Commands.EditStochiometricCoefficient(newCoefficient, _reactionPartner.StoichiometricCoefficient, _reaction.Name, _moleculeName, _isEduct ? ObjectTypes.Educt : ObjectTypes.Product);
}
public ContextMenuForEductBuilder(IReactionBuilder reactionBuilder, IReactionPartnerBuilder reactionPartnerBuilder)
{
_reactionBuilder = reactionBuilder;
_reactionPartnerBuilder = reactionPartnerBuilder;
}
private IMenuBarItem createRemoveItem(IReactionBuilder reactionBuilder, IReactionPartnerBuilder reactionPartnerBuilder)
{
return(CreateMenuButton.WithCaption(AppConstants.MenuNames.Delete)
.WithIcon(ApplicationIcons.Delete)
.WithCommand(IoC.Resolve <RemoveEductUICommand>().Initialize(reactionPartnerBuilder, reactionBuilder)));
}
public RemovedReactionPartnerEvent(IReactionPartnerBuilder reactionPartnerBuilder, IReactionBuilder reaction)
{
ReactionPartnerBuilder = reactionPartnerBuilder;
Reaction = reaction;
}
public AddedReactionPartnerEvent(IReactionPartnerBuilder value, IReactionBuilder reaction)
{
ReactionPartnerBuilder = value;
Reaction = reaction;
}
public void RemoveProduct(IReactionPartnerBuilder product) => _products.Remove(product);
public ReactionPartnerBuilderDTO MapFrom(IReactionPartnerBuilder reactionPartnerBuilder)
{
return(new ReactionPartnerBuilderDTO(reactionPartnerBuilder));
}
public RemoveReactionPartnerFromProductCollection(IReactionBuilder reactionBuilder, IReactionPartnerBuilder reactionPartnerBuilder, IMoBiReactionBuildingBlock reactionBuildingBlock)
: base(reactionBuilder, reactionPartnerBuilder, reactionBuildingBlock, x => x.RemoveProduct)
{
ObjectType = ObjectTypes.Product;
}
protected override void ClearReferences()
{
base.ClearReferences();
_reaction = null;
_reactionPartner = null;
}
public EditReactionPartnerEvent(IReactionBuilder reaction, IReactionPartnerBuilder partner)
{
Reaction = reaction;
ReactionPartner = partner;
}
private ICommand <IMoBiContext> movePartnersCommand(IMoBiReactionBuildingBlock sourceBuildingBlock, IMoBiReactionBuildingBlock targetBuildingBlock, IReactionPartnerBuilder partner)
{
return(movePartnerNamed(sourceBuildingBlock, targetBuildingBlock, partner.MoleculeName));
}
public ReactionPartnerBuilderDTO(IReactionPartnerBuilder reactionPartnerBuilder)
{
PartnerBuilder = reactionPartnerBuilder;
}
