private void adjustDisplayPathForGallBladder(PathElements pathElements, IQuantity quantity)
{
if (quantity.IsNamed(CoreConstants.Observer.FRACTION_EXCRETED_TO_BILE))
return;
adjustDisplayPathForContainerObserver(pathElements, quantity);
}
private bool isMoleculeConcentrationInConcentrationBasedProject(IQuantity quantity)
{
return(quantity.IsAnImplementationOf <IParameter>() &&
_reactionDimensionRetriever.SelectedDimensionMode == ReactionDimensionMode.ConcentrationBased &&
quantity.IsNamed(Constants.Parameters.CONCENTRATION) &&
quantity.ParentContainer.IsAnImplementationOf <IMoleculeAmount>());
}
private void adjustDisplayPathForQuantity(PathElements pathElements, IQuantity quantity)
{
if (quantity.HasAncestorNamed(CoreConstants.Organ.GALLBLADDER))
{
adjustDisplayPathForGallBladder(pathElements, quantity);
}
else if (quantity.HasAncestorNamed(CoreConstants.Organ.LUMEN))
{
adjustDisplayPathForLumen(pathElements, quantity);
}
else if (quantity.IsNamed(CoreConstants.Observer.PLASMA_UNBOUND))
{
adjustDisplayPathForContainerObserver(pathElements, quantity);
}
else if (quantity.Name.StartsWith(CoreConstants.Observer.TOTAL_FRACTION_OF_DOSE))
{
adjustDisplayPathForTotalFractionOfDose(pathElements, quantity);
}
//Container observers directly in a container located under organism
else if (!pathElements.Contains(PathElementId.BottomCompartment))
{
adjustDisplayPathForContainerObserver(pathElements, quantity);
}
else if (quantity.IsAnImplementationOf <IObserver>())
{
adjustDisplayNameForMoleculeObserver(pathElements, quantity.DowncastTo <IObserver>());
}
}
private void adjustDisplayPathForQuantity(PathElements pathElements, IQuantity quantity)
{
if (quantity.HasAncestorNamed(CoreConstants.Organ.Gallbladder))
{
adjustDisplayPathForGallBladder(pathElements, quantity);
}
else if (quantity.HasAncestorNamed(CoreConstants.Organ.Lumen))
{
adjustDisplayPathForLumen(pathElements, quantity);
}
else if (quantity.IsNamed(PLASMA_UNBOUND))
{
adjustDisplayPathForContainerObserver(pathElements, quantity);
}
else if (!pathElements.Contains(PathElement.BottomCompartment))
{
adjustDisplayPathForContainerObserver(pathElements, quantity);
}
else if (quantity.IsAnImplementationOf <IObserver>())
{
adjustDisplayNameForMoleculeObserver(pathElements, quantity.DowncastTo <IObserver>());
}
}
private bool isMoleculeStartValue(IQuantity changedQuantity, IMoBiBuildConfiguration buildConfiguration)
{
return(changedQuantity.IsAnImplementationOf <IMoleculeAmount>() ||
(changedQuantity.ParentContainer.IsAnImplementationOf <IMoleculeAmount>() && changedQuantity.IsNamed(Constants.Parameters.START_VALUE)));
}