public IParameterStartValuesBuildingBlock CreateFor(IBuildConfiguration buildConfiguration, Simulation simulation)
{
try
{
//default default parameter start values matrix
_spatialStructure = buildConfiguration.SpatialStructure;
_defaultStartValues = _parameterStartValuesCreator.CreateFrom(_spatialStructure, buildConfiguration.Molecules);
_formulaCache = _defaultStartValues.FormulaCache;
var individual = simulation.Individual;
//set the relative expression values for each protein defined in individual
foreach (var protein in individual.AllMolecules <IndividualProtein>())
{
updateProteinParametersValues(protein);
}
foreach (var transporter in individual.AllMolecules <IndividualTransporter>())
{
updateTransporterParameterValues(transporter);
}
updateSimulationParameters(simulation);
return(_defaultStartValues.WithName(simulation.Name));
}
finally
{
_spatialStructure = null;
_defaultStartValues = null;
_formulaCache = null;
}
}
public IParameterStartValuesBuildingBlock CreateFor(IBuildConfiguration buildConfiguration, Simulation simulation)
{
try
{
//default default parameter start values matrix
var spatialStructure = buildConfiguration.SpatialStructure;
var molecules = buildConfiguration.Molecules;
_defaultStartValues = _parameterStartValuesCreator.CreateFrom(spatialStructure, molecules);
var individual = simulation.Individual;
//set the relative expression values for each molecule defined in individual
individual.AllMolecules().Each(molecule => updateMoleculeParametersValues(molecule, individual, simulation));
updateSimulationParameters(simulation);
return(_defaultStartValues.WithName(simulation.Name));
}
finally
{
_defaultStartValues = null;
}
}