public void SynchronizeExpressionProfileWithSimulationSubject(ExpressionProfile expressionProfile, ISimulationSubject simulationSubject)
{
var moleculeInIndividual = simulationSubject.MoleculeByName(expressionProfile.MoleculeName);
var(targetMolecule, targetIndividual) = expressionProfile;
// SimulationSubject To ExpressionProfile. We do not update the parameter origin id in the target entities (expression profile)
synchronizeExpressionProfiles(moleculeInIndividual, simulationSubject, targetMolecule, targetIndividual, updateParameterOriginId: false);
//however we need to make sure that we reference the expression profile parameter in the source individual
var allExpressionProfileParameters = allMoleculeParametersFor(targetIndividual, targetMolecule);
var allIndividualParameters = allMoleculeParametersFor(simulationSubject, moleculeInIndividual);
_parameterIdUpdater.UpdateParameterIds(allExpressionProfileParameters, allIndividualParameters);
}
private IEventGroupBuilder createFormulationAsEventGroupBuilderFrom(Formulation formulation)
{
var formulationBuilder = _objectBaseFactory.Create <IEventGroupBuilder>();
formulationBuilder.UpdatePropertiesFrom(formulation, _cloneManagerForBuildingBlock);
foreach (var parameter in formulation.AllParameters())
{
var builderParameter = _cloneManagerForBuildingBlock.Clone(parameter);
//reset the origin in any case since it might have been set by clone
builderParameter.Origin.ParameterId = string.Empty;
formulationBuilder.Add(builderParameter);
}
_parameterIdUpdater.UpdateBuildingBlockId(formulationBuilder, formulation);
_parameterIdUpdater.UpdateParameterIds(formulation, formulationBuilder);
if (formulation.FormulationType.Equals(CoreConstants.Formulation.Particles))
{
setParticleRadiusDistributionParametersToLockedAndInvisible(formulationBuilder);
}
return(formulationBuilder);
}