public static INeatGenome Crossover(INeatGenome genome1, INeatGenome genome2)
{
var childGenome = new NeatGenome(genome1.NetworkParameters, genome1.MutationParameters);
var nodes = genome1.NodeList.Union(genome2.NodeList).ToList();
foreach (var node in nodes)
{
childGenome._nodeList.Add(new NodeGene(node.NodeType, node.Idx, node.ActivationType));
}
var childConnectionList = genome1.ConnectionList.Union(genome2.ConnectionList).ToList();
foreach (var connectionIdx in childConnectionList)
{
childGenome._connectionList.Add(connectionIdx);
}
IConnectionGene connectionGene = null;
for (int i = 0; i < childConnectionList.Count; i++)
{
var childConnectionIdx = childConnectionList[i];
if (genome1.Connections.ContainsKey(childConnectionIdx))
{
connectionGene = genome1.Connections[childConnectionIdx];
}
else if (genome2.Connections.ContainsKey(childConnectionIdx))
{
connectionGene = genome2.Connections[childConnectionIdx];
}
else
{
throw new ArgumentOutOfRangeException(nameof(childConnectionList), "Parent genomes don't have child connection");
}
childGenome._connections.Add(childConnectionIdx, new ConnectionGene(connectionGene));
}
var childVacantConnections = genome1.VacantConnections.Union(genome2.VacantConnections).ToList();
foreach (var vacantConnection in childVacantConnections)
{
if (childGenome.Connections.Values
.FirstOrDefault(c => (c.SourceNodeIdx == vacantConnection.Item1) && (c.TargetNodeIdx == vacantConnection.Item2)) == null)
{
childGenome._vacantConnections.Add((vacantConnection.Item1, vacantConnection.Item2));
}
}
return(childGenome);
}
/// <summary>
/// Dump to Console genome structure
/// </summary>
/// <param name="genome">Genome</param>
public static void PrintGenomeStructure(this INeatGenome genome)
{
Console.WriteLine("-------------------");
Console.WriteLine("Genome structure");
Console.WriteLine();
Console.WriteLine($"Input node count: {genome.InputNodeCount}");
Console.WriteLine($"Output node count: {genome.OutputNodeCount}");
Console.WriteLine($"Node count: {genome.NodeList.Count}");
Console.WriteLine($"Connections count: {genome.Connections.Count}");
Console.WriteLine();
Console.WriteLine("[Connections]");
foreach (var connection in genome.Connections)
{
Console.WriteLine($"Id: {connection.Key} {connection.Value.SourceNodeIdx}->{connection.Value.TargetNodeIdx} {connection.Value.IsActive}");
}
Console.WriteLine();
Console.WriteLine("-------------------");
}
public XorIndividual(INeatGenome genome)
{
Genome = genome;
Error = double.NaN;
}
} // Correct recognized digits
public MnistIndividual(INeatGenome genome)
{
Genome = genome;
Error = double.NaN;
Fitness = float.NaN;
}
public NetworkBuilder(INeatGenome genome)
{
_genome = genome;
_nextNetNodeId = NetworkParameters.BiasNodeCount + _genome.InputNodeCount + _genome.OutputNodeCount;
_netMap = new Dictionary <NodeMap, IList <INetConnection> >(_nextNetNodeId);
}
