static int Main(string[] args)
{
if (args.Length == 0)
{
DeathRecord deathRecord = new DeathRecord();
// Identifier
deathRecord.Identifier = "1";
// CertifiedTime
deathRecord.CertifiedTime = "2019-01-29T16:48:06-05:00";
// RegisteredTime
deathRecord.RegisteredTime = "2019-02-01T16:47:04-05:00";
// CertificationRole
Dictionary <string, string> certificationRole = new Dictionary <string, string>();
certificationRole.Add("code", "434641000124105");
certificationRole.Add("system", "http://snomed.info/sct");
certificationRole.Add("display", "Physician");
deathRecord.CertificationRole = certificationRole;
// InterestedPartyIdentifier
var ipId = new Dictionary <string, string>();
ipId["system"] = "http://hl7.org/fhir/sid/us-npi";
ipId["value"] = "0000000000";
deathRecord.InterestedPartyIdentifier = ipId;
// InterestedPartyName
deathRecord.InterestedPartyName = "Example Hospital";
// InterestedPartyAddress
Dictionary <string, string> address = new Dictionary <string, string>();
address.Add("addressLine1", "10 Example Street");
address.Add("addressLine2", "Line 2");
address.Add("addressCity", "Bedford");
address.Add("addressCounty", "Middlesex");
address.Add("addressState", "MA");
address.Add("addressZip", "01730");
address.Add("addressCountry", "United States");
deathRecord.InterestedPartyAddress = address;
// InterestedPartyType
Dictionary <string, string> type = new Dictionary <string, string>();
type.Add("code", "prov");
type.Add("system", "http://terminology.hl7.org/CodeSystem/organization-type");
type.Add("display", "Healthcare Provider");
deathRecord.InterestedPartyType = type;
// State Local Identifier
deathRecord.StateLocalIdentifier = "42";
// MannerOfDeathType
Dictionary <string, string> mannerOfDeathType = new Dictionary <string, string>();
mannerOfDeathType.Add("code", "7878000");
mannerOfDeathType.Add("system", "http://snomed.info/sct");
mannerOfDeathType.Add("display", "Accidental death");
deathRecord.MannerOfDeathType = mannerOfDeathType;
// CertifierGivenNames
string[] cnames = { "Doctor", "Middle" };
deathRecord.CertifierGivenNames = cnames;
// CertifierFamilyName
deathRecord.CertifierFamilyName = "Last";
// CertifierSuffix
deathRecord.CertifierSuffix = "Jr.";
// CertifierAddress
Dictionary <string, string> caddress = new Dictionary <string, string>();
caddress.Add("addressLine1", "11 Example Street");
caddress.Add("addressLine2", "Line 2");
caddress.Add("addressCity", "Bedford");
caddress.Add("addressCounty", "Middlesex");
caddress.Add("addressState", "MA");
caddress.Add("addressZip", "01730");
caddress.Add("addressCountry", "United States");
deathRecord.CertifierAddress = caddress;
Dictionary <string, string> certifierIdentifier = new Dictionary <string, string>();
certifierIdentifier.Add("system", "http://hl7.org/fhir/sid/us-npi");
certifierIdentifier.Add("value", "1234567890");
deathRecord.CertifierIdentifier = certifierIdentifier;
// CertifierLicenseNumber
deathRecord.CertifierLicenseNumber = "789123456";
// CertifierQualification
Dictionary <string, string> qualification = new Dictionary <string, string>();
qualification.Add("code", "434641000124105");
qualification.Add("system", "http://snomed.info/sct");
qualification.Add("display", "Physician certified and pronounced death certificate");
deathRecord.CertifierQualification = qualification;
// ContributingConditions
deathRecord.ContributingConditions = "Example Contributing Conditions";
// COD1A
deathRecord.COD1A = "Rupture of myocardium";
// INTERVAL1A
deathRecord.INTERVAL1A = "minutes";
// CODE1A
Dictionary <string, string> code1a = new Dictionary <string, string>();
code1a.Add("code", "I21.0");
code1a.Add("system", "http://hl7.org/fhir/sid/icd-10");
code1a.Add("display", "Acute transmural myocardial infarction of anterior wall");
deathRecord.CODE1A = code1a;
// COD1B
deathRecord.COD1B = "Acute myocardial infarction";
// INTERVAL1B
deathRecord.INTERVAL1B = "6 days";
// CODE1B
Dictionary <string, string> code1b = new Dictionary <string, string>();
code1b.Add("code", "I21.9");
code1b.Add("system", "http://hl7.org/fhir/sid/icd-10");
code1b.Add("display", "Acute myocardial infarction, unspecified");
deathRecord.CODE1B = code1b;
// COD1C
deathRecord.COD1C = "Coronary artery thrombosis";
// INTERVAL1C
deathRecord.INTERVAL1C = "5 years";
// COD1D
deathRecord.COD1D = "Atherosclerotic coronary artery disease";
// INTERVAL1D
deathRecord.INTERVAL1D = "7 years";
// GivenNames
deathRecord.GivenNames = new string[] { "Example", "Something", "Middle" };
// FamilyName
deathRecord.FamilyName = "Last";
// AliasGivenNames
deathRecord.AliasGivenNames = new string[] { "FirstNameAlias", "MiddleAlias" };
// AliasFamilyName
deathRecord.AliasFamilyName = "LastNameAlias";
// AliasSuffix
deathRecord.AliasSuffix = "Jr.";
// Suffix
deathRecord.Suffix = "Jr.";
// Gender
deathRecord.Gender = "male";
// BirthSex
deathRecord.BirthSex = "F";
// DateOfBirth
deathRecord.DateOfBirth = "1940-02-19";
// Residence
Dictionary <string, string> raddress = new Dictionary <string, string>();
raddress.Add("addressLine1", "101 Example Street");
raddress.Add("addressLine2", "Line 2");
raddress.Add("addressCity", "Bedford");
raddress.Add("addressCounty", "Middlesex");
raddress.Add("addressState", "MA");
raddress.Add("addressZip", "01730");
raddress.Add("addressCountry", "United States");
deathRecord.Residence = raddress;
// ResidenceWithinCityLimits
deathRecord.ResidenceWithinCityLimitsBoolean = false;
// SSN
deathRecord.SSN = "123456789";
// Ethnicity
Tuple <string, string>[] ethnicity = { Tuple.Create("Hispanic or Latino", "2135-2"), Tuple.Create("Puerto Rican", "2180-8") };
deathRecord.Ethnicity = ethnicity;
// Race
Tuple <string, string>[] race = { Tuple.Create("White", "2106-3"), Tuple.Create("Native Hawaiian or Other Pacific Islander", "2076-8"), Tuple.Create("Native Hawaiian", "2079-2") };
deathRecord.Race = race;
// MaritalStatus
Dictionary <string, string> mscode = new Dictionary <string, string>();
mscode.Add("code", "S");
mscode.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mscode.Add("display", "Never Married");
deathRecord.MaritalStatus = mscode;
// FatherGivenNames
string[] fnames = { "Father", "Middle" };
deathRecord.FatherGivenNames = fnames;
// FatherFamilyName
deathRecord.FatherFamilyName = "Last";
// FatherSuffix
deathRecord.FatherSuffix = "Sr.";
// MotherGivenNames
string[] mnames = { "Mother", "Middle" };
deathRecord.MotherGivenNames = mnames;
// MotherMaidenName
deathRecord.MotherMaidenName = "Maiden";
// MotherSuffix
deathRecord.MotherSuffix = "Dr.";
// SpouseGivenNames
string[] spnames = { "Spouse", "Middle" };
deathRecord.SpouseGivenNames = spnames;
// SpouseFamilyName
deathRecord.SpouseFamilyName = "Last";
// SpouseSuffix
deathRecord.SpouseSuffix = "Ph.D.";
// EducationLevel
Dictionary <string, string> elevel = new Dictionary <string, string>();
elevel.Add("code", "BD");
elevel.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
elevel.Add("display", "College or baccalaureate degree complete");
deathRecord.EducationLevel = elevel;
// BirthRecordId
deathRecord.BirthRecordId = "4242123";
// BirthRecordState
Dictionary <string, string> brs = new Dictionary <string, string>();
brs.Add("code", "US-MA");
brs.Add("system", "urn:iso:std:iso:3166:-2");
brs.Add("display", "Massachusetts");
deathRecord.BirthRecordState = brs;
// BirthRecordYear
deathRecord.BirthRecordYear = "1940";
// UsualOccupation
deathRecord.UsualOccupation = "secretary";
deathRecord.UsualOccupationStart = "1965-01-01";
deathRecord.UsualOccupationEnd = "2010-01-01";
// UsualIndustry
deathRecord.UsualIndustry = "State agency";
// MilitaryService
Dictionary <string, string> mserv = new Dictionary <string, string>();
mserv.Add("code", "Y");
mserv.Add("system", "http://terminology.hl7.org/CodeSystem/v2-0136");
mserv.Add("display", "Yes");
deathRecord.MilitaryService = mserv;
// MorticianGivenNames
string[] fdnames = { "FD", "Middle" };
deathRecord.MorticianGivenNames = fdnames;
// MorticianFamilyName
deathRecord.MorticianFamilyName = "Last";
// MorticianSuffix
deathRecord.MorticianSuffix = "Jr.";
// MorticianIdentifier
var mortId = new Dictionary <string, string>();
mortId["value"] = "9876543210";
mortId["system"] = "http://hl7.org/fhir/sid/us-npi";
deathRecord.MorticianIdentifier = mortId;
// FuneralHomeAddress
Dictionary <string, string> fdaddress = new Dictionary <string, string>();
fdaddress.Add("addressLine1", "1011010 Example Street");
fdaddress.Add("addressLine2", "Line 2");
fdaddress.Add("addressCity", "Bedford");
fdaddress.Add("addressCounty", "Middlesex");
fdaddress.Add("addressState", "MA");
fdaddress.Add("addressZip", "01730");
fdaddress.Add("addressCountry", "United States");
deathRecord.FuneralHomeAddress = fdaddress;
// FuneralHomeName
deathRecord.FuneralHomeName = "Smith Funeral Home";
// FuneralDirectorPhone
deathRecord.FuneralDirectorPhone = "000-000-0000";
// DispositionLocationAddress
Dictionary <string, string> dladdress = new Dictionary <string, string>();
dladdress.Add("addressLine1", "603 Example Street");
dladdress.Add("addressLine2", "Line 2");
dladdress.Add("addressCity", "Bedford");
dladdress.Add("addressCounty", "Middlesex");
dladdress.Add("addressState", "MA");
dladdress.Add("addressZip", "01730");
dladdress.Add("addressCountry", "United States");
deathRecord.DispositionLocationAddress = dladdress;
// DispositionLocationName
deathRecord.DispositionLocationName = "Bedford Cemetery";
// DecedentDispositionMethod
Dictionary <string, string> ddm = new Dictionary <string, string>();
ddm.Add("code", "449971000124106");
ddm.Add("system", "http://snomed.info/sct");
ddm.Add("display", "Burial");
deathRecord.DecedentDispositionMethod = ddm;
// AutopsyPerformedIndicator
Dictionary <string, string> api = new Dictionary <string, string>();
api.Add("code", "Y");
api.Add("system", "http://terminology.hl7.org/CodeSystem/v2-0136");
api.Add("display", "Yes");
deathRecord.AutopsyPerformedIndicator = api;
// AutopsyResultsAvailable
Dictionary <string, string> ara = new Dictionary <string, string>();
ara.Add("code", "Y");
ara.Add("system", "http://terminology.hl7.org/CodeSystem/v2-0136");
ara.Add("display", "Yes");
deathRecord.AutopsyResultsAvailable = ara;
// PregnancyStatus
Dictionary <string, string> ps = new Dictionary <string, string>();
ps.Add("code", "NA");
ps.Add("system", "http://terminology.hl7.org/CodeSystem/v3-NullFlavor");
ps.Add("display", "not applicable");
deathRecord.PregnancyStatus = ps;
// TransportationRole
Dictionary <string, string> tr = new Dictionary <string, string>();
tr.Add("code", "257500003");
tr.Add("system", "http://snomed.info/sct");
tr.Add("display", "Passenger");
deathRecord.TransportationRole = tr;
// ExaminerContacted
deathRecord.ExaminerContactedBoolean = false;
// TobaccoUse
Dictionary <string, string> tbu = new Dictionary <string, string>();
tbu.Add("code", "373066001");
tbu.Add("system", "http://snomed.info/sct");
tbu.Add("display", "Yes");
deathRecord.TobaccoUse = tbu;
// InjuryLocationAddress
Dictionary <string, string> iladdress = new Dictionary <string, string>();
iladdress.Add("addressLine1", "781 Example Street");
iladdress.Add("addressLine2", "Line 2");
iladdress.Add("addressCity", "Bedford");
iladdress.Add("addressCounty", "Middlesex");
iladdress.Add("addressState", "MA");
iladdress.Add("addressZip", "01730");
iladdress.Add("addressCountry", "United States");
deathRecord.InjuryLocationAddress = iladdress;
// InjuryLocationName
deathRecord.InjuryLocationName = "Example Injury Location Name";
// InjuryDescription
deathRecord.InjuryDescription = "Example Injury Description";
// InjuryLocationDescription
deathRecord.InjuryLocationDescription = "Example Injury Location Description";
// InjuryDate
deathRecord.InjuryDate = "2018-02-19T16:48:06-05:00";
// InjuryAtWork
Dictionary <string, string> codeIW = new Dictionary <string, string>();
codeIW.Add("code", "N");
codeIW.Add("system", "http://terminology.hl7.org/CodeSystem/v2-0136");
codeIW.Add("display", "No");
deathRecord.InjuryAtWork = codeIW;
// TransportationInjury
Dictionary <string, string> codeTI = new Dictionary <string, string>();
codeTI.Add("code", "Y");
codeTI.Add("system", "http://terminology.hl7.org/CodeSystem/v2-0136");
codeTI.Add("display", "Yes");
deathRecord.TransportationEvent = codeTI;
// InjuryPlace
Dictionary <string, string> ip = new Dictionary <string, string>();
ip["code"] = "0";
ip["system"] = "urn:oid:2.16.840.1.114222.4.5.320";
ip["display"] = "Home";
deathRecord.InjuryPlace = ip;
// DeathLocationAddress
Dictionary <string, string> dtladdress = new Dictionary <string, string>();
dtladdress.Add("addressLine1", "671 Example Street");
dtladdress.Add("addressLine2", "Line 2");
dtladdress.Add("addressCity", "Bedford");
dtladdress.Add("addressCounty", "Middlesex");
dtladdress.Add("addressState", "MA");
dtladdress.Add("addressZip", "01730");
dtladdress.Add("addressCountry", "United States");
deathRecord.DeathLocationAddress = dtladdress;
// DeathLocationName
deathRecord.DeathLocationName = "Example Death Location Name";
// DeathLocationDescription
deathRecord.DeathLocationDescription = "Example Death Location Description";
// DeathLocationType
Dictionary <string, string> deathLocationCode = new Dictionary <string, string>();
deathLocationCode.Add("code", "16983000");
deathLocationCode.Add("system", "http://snomed.info/sct");
deathLocationCode.Add("display", "Death in hospital");
deathRecord.DeathLocationType = deathLocationCode;
// DeathLocationJurisdiction
deathRecord.DeathLocationJurisdiction = "MA";
// DateOfDeath
deathRecord.DateOfDeath = "2018-02-19T16:48:06-05:00";
// AgeAtDeath
Dictionary <string, string> aad = new Dictionary <string, string>();
aad.Add("unit", "a");
aad.Add("value", "79");
deathRecord.AgeAtDeath = aad;
// DateOfDeathPronouncement
deathRecord.DateOfDeathPronouncement = "2018-02-20T16:48:06-05:00";
// PronouncerGivenNames
string[] pronouncer_gnames = { "FD", "Middle" };
deathRecord.PronouncerGivenNames = pronouncer_gnames;
// PronouncerFamilyName
deathRecord.PronouncerFamilyName = "Last";
// PronouncerSuffix
deathRecord.PronouncerSuffix = "Jr.";
// PronouncerIdentifier
var pronouncerId = new Dictionary <string, string>();
pronouncerId["value"] = "0000000000";
pronouncerId["system"] = "http://hl7.org/fhir/sid/us-npi";
deathRecord.PronouncerIdentifier = pronouncerId;
Console.WriteLine(XDocument.Parse(deathRecord.ToXML()).ToString() + "\n\n");
//Console.WriteLine(Newtonsoft.Json.JsonConvert.SerializeObject(Newtonsoft.Json.JsonConvert.DeserializeObject(deathRecord.ToJSON()), Newtonsoft.Json.Formatting.Indented) + "\n\n");
return(0);
}
else if (args.Length == 2 && args[0] == "description")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
Console.WriteLine(d.ToDescription());
return(0);
}
else if (args.Length == 2 && args[0] == "2ije")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
IJEMortality ije1 = new IJEMortality(d);
Console.WriteLine(ije1.ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "ije2xml")
{
IJEMortality ije1 = new IJEMortality(File.ReadAllText(args[1]));
DeathRecord d = ije1.ToDeathRecord();
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "ije2json")
{
IJEMortality ije1 = new IJEMortality(File.ReadAllText(args[1]));
DeathRecord d = ije1.ToDeathRecord();
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "json2xml")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "checkXml")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]), true);
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "checkJson")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]), true);
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "xml2json")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "xml2xml")
{
// Forces record through getters and then setters, prints as xml
DeathRecord indr = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord outdr = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
property.SetValue(outdr, property.GetValue(indr));
}
Console.WriteLine(XDocument.Parse(outdr.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "json2json")
{
// Forces record through getters and then setters, prints as JSON
DeathRecord indr = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord outdr = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
property.SetValue(outdr, property.GetValue(indr));
}
Console.WriteLine(outdr.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "roundtrip-ije")
{
Console.WriteLine("Converting FHIR to IJE...\n");
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
//Console.WriteLine(XDocument.Parse(d.ToXML()).ToString() + "\n");
IJEMortality ije1 = new IJEMortality(d);
//Console.WriteLine(ije1.ToString() + "\n\n");
IJEMortality ije2 = new IJEMortality(ije1.ToString());
//Console.WriteLine(ije2.ToString() + "\n\n");
//Console.WriteLine(XDocument.Parse(ije2.ToDeathRecord().ToXML()).ToString() + "\n");
IJEMortality ije3 = new IJEMortality(new DeathRecord(ije2.ToDeathRecord().ToXML()));
int issues = 0;
int total = 0;
foreach (PropertyInfo property in typeof(IJEMortality).GetProperties())
{
string val1 = Convert.ToString(property.GetValue(ije1, null));
string val2 = Convert.ToString(property.GetValue(ije2, null));
string val3 = Convert.ToString(property.GetValue(ije3, null));
IJEField info = (IJEField)property.GetCustomAttributes().First();
if (val1.ToUpper() != val2.ToUpper() || val1.ToUpper() != val3.ToUpper() || val2.ToUpper() != val3.ToUpper())
{
issues++;
Console.WriteLine($"[MISMATCH]\t{info.Name}: {info.Contents} \t\t\"{val1}\" != \"{val2}\" != \"{val3}\"");
}
total++;
}
Console.WriteLine($"\n{issues} issues out of {total} total fields.");
return(issues);
}
else if (args.Length == 2 && args[0] == "roundtrip-all")
{
DeathRecord d1 = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord d2 = new DeathRecord(d1.ToJSON());
DeathRecord d3 = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("Boolean"))
{
continue;
}
property.SetValue(d3, property.GetValue(d2));
}
int good = 0;
int bad = 0;
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("Boolean"))
{
continue;
}
string one;
string two;
string three;
if (property.PropertyType.ToString() == "System.Collections.Generic.Dictionary`2[System.String,System.String]")
{
Dictionary <string, string> oneDict = (Dictionary <string, string>)property.GetValue(d1);
one = String.Join(", ", oneDict.Select(x => x.Key + "=" + x.Value).ToArray());
two = String.Join(", ", ((Dictionary <string, string>)property.GetValue(d2)).Select(x => x.Key + "=" + x.Value).ToArray());
three = String.Join(", ", ((Dictionary <string, string>)property.GetValue(d3)).Select(x => x.Key + "=" + x.Value).ToArray());
}
else if (property.PropertyType.ToString() == "System.String[]")
{
one = String.Join(", ", (string[])property.GetValue(d1));
two = String.Join(", ", (string[])property.GetValue(d2));
three = String.Join(", ", (string[])property.GetValue(d3));
}
else
{
one = Convert.ToString(property.GetValue(d1));
two = Convert.ToString(property.GetValue(d2));
three = Convert.ToString(property.GetValue(d3));
}
if (one.ToLower() != three.ToLower())
{
Console.WriteLine("[MISMATCH]\t" + $"\"{one}\" (property: {property.Name}) does not equal \"{three}\"" + $" 1:\"{one}\" 2:\"{two}\" 3:\"{three}\"");
bad++;
}
else
{
Console.WriteLine("[MATCH]\t" + $"\"{one}\" (property: {property.Name}) equals \"{three}\"" + $" 1:\"{one}\" 2:\"{two}\" 3:\"{three}\"");
good++;
}
}
Console.WriteLine($"\n{bad} mismatches out of {good + bad} total properties checked.");
if (bad > 0)
{
return(1);
}
else
{
return(0);
}
}
else if (args.Length == 2 && args[0] == "ije")
{
string ijeString = File.ReadAllText(args[1]);
List <PropertyInfo> properties = typeof(IJEMortality).GetProperties().ToList().OrderBy(p => ((IJEField)p.GetCustomAttributes().First()).Field).ToList();
foreach (PropertyInfo property in properties)
{
IJEField info = (IJEField)property.GetCustomAttributes().First();
string field = ijeString.Substring(info.Location - 1, info.Length);
Console.WriteLine($"{info.Field, -5} {info.Name,-15} {Truncate(info.Contents, 75), -75}: \"{field + "\"",-80}");
}
}
else if (args.Length == 3 && args[0] == "compare")
{
string ijeString1 = File.ReadAllText(args[1]);
DeathRecord record2 = new DeathRecord(File.ReadAllText(args[2]));
IJEMortality ije2 = new IJEMortality(record2);
string ijeString2 = ije2.ToString();
List <PropertyInfo> properties = typeof(IJEMortality).GetProperties().ToList().OrderBy(p => ((IJEField)p.GetCustomAttributes().First()).Field).ToList();
int differences = 0;
foreach (PropertyInfo property in properties)
{
IJEField info = (IJEField)property.GetCustomAttributes().First();
string field1 = ijeString1.Substring(info.Location - 1, info.Length);
string field2 = ijeString2.Substring(info.Location - 1, info.Length);
if (field1 != field2)
{
differences += 1;
Console.WriteLine($"1: {info.Field, -5} {info.Name,-15} {Truncate(info.Contents, 75), -75}: \"{field1 + "\"",-80}");
Console.WriteLine($"2: {info.Field, -5} {info.Name,-15} {Truncate(info.Contents, 75), -75}: \"{field2 + "\"",-80}");
Console.WriteLine();
}
}
Console.WriteLine($"Differences detected: {differences}");
return(differences);
}
else if (args.Length == 2 && args[0] == "extract")
{
BaseMessage message = BaseMessage.Parse(File.ReadAllText(args[1]));
switch (message)
{
case DeathRecordSubmission submission:
var record = submission.DeathRecord;
Console.WriteLine(record.ToJSON());
break;
}
return(0);
}
else if (args.Length == 2 && args[0] == "submit")
{
DeathRecord record = new DeathRecord(File.ReadAllText(args[1]));
DeathRecordSubmission message = new DeathRecordSubmission(record);
message.MessageSource = "http://mitre.org/vrdr";
Console.WriteLine(message.ToJSON(true));
return(0);
}
else if (args.Length == 2 && args[0] == "resubmit")
{
DeathRecord record = new DeathRecord(File.ReadAllText(args[1]));
DeathRecordUpdate message = new DeathRecordUpdate(record);
message.MessageSource = "http://mitre.org/vrdr";
Console.WriteLine(message.ToJSON(true));
return(0);
}
else if (args.Length == 2 && args[0] == "ack")
{
BaseMessage message = BaseMessage.Parse(File.ReadAllText(args[1]));
AckMessage ackMessage = new AckMessage(message);
Console.WriteLine(ackMessage.ToJSON(true));
return(0);
}
else if (args.Length == 2 && args[0] == "showcodes")
{
BaseMessage message = BaseMessage.Parse(File.ReadAllText(args[1]));
switch (message)
{
case CodingResponseMessage codingResponse:
Console.WriteLine($"\nUnderlying COD: {codingResponse.UnderlyingCauseOfDeath}\n");
Console.WriteLine($"Record Axis Codes: {String.Join(", ", codingResponse.CauseOfDeathRecordAxis.ToArray())}\n");
Console.WriteLine("Entity Axis Codes:");
foreach (var entry in codingResponse.CauseOfDeathEntityAxisList)
{
Console.WriteLine($" Line: {entry.Line} Sequence: {entry.Position} Code: {entry.Code}");
}
Console.WriteLine();
break;
default:
Console.WriteLine("Message does not appear to be a coding response message");
break;
}
}
return(0);
}
static int Main(string[] args)
{
if (args.Length == 0)
{
Console.WriteLine("No filepath given; Constructing a fake record and printing its XML and JSON output...\n");
DeathRecord deathRecord = new DeathRecord();
deathRecord.Id = "1337";
deathRecord.DateOfRegistration = "2018-07-11";
deathRecord.GivenNames = new string[] { "First", "Middle" };
deathRecord.FamilyName = "Last";
deathRecord.MaidenName = "Last Maiden";
deathRecord.Suffix = "Sr.";
deathRecord.FatherFamilyName = "FTHLast";
deathRecord.Gender = "male";
Dictionary <string, string> code = new Dictionary <string, string>();
code.Add("code", "M");
code.Add("system", "http://hl7.org/fhir/us/core/ValueSet/us-core-birthsex");
code.Add("display", "Male");
deathRecord.BirthSex = code;
Dictionary <string, string> dictionary = new Dictionary <string, string>();
dictionary.Add("residenceLine1", "19 Example Street");
dictionary.Add("residenceLine2", "Line 2");
dictionary.Add("residenceCity", "Bedford");
dictionary.Add("residenceCounty", "Middlesex");
dictionary.Add("residenceState", "Massachusetts");
dictionary.Add("residenceZip", "01730");
dictionary.Add("residenceCountry", "United States");
dictionary.Add("residenceInsideCityLimits", "True");
deathRecord.Residence = dictionary;
deathRecord.SSN = "111223333";
Tuple <string, string>[] ethnicity = { Tuple.Create("Hispanic or Latino", "2135-2"), Tuple.Create("Puerto Rican", "2180-8") };
deathRecord.Ethnicity = ethnicity;
Tuple <string, string>[] race = { Tuple.Create("White", "2106-3"), Tuple.Create("Native Hawaiian or Other Pacific Islander", "2076-8") };
deathRecord.Race = race;
deathRecord.DateOfBirth = "1970-04-24";
deathRecord.DateOfDeath = "1970-04-24";
dictionary = new Dictionary <string, string>();
dictionary.Add("placeOfBirthLine1", "9 Example Street");
dictionary.Add("placeOfBirthLine2", "Line 2");
dictionary.Add("placeOfBirthCity", "Bedford");
dictionary.Add("placeOfBirthCounty", "Middlesex");
dictionary.Add("placeOfBirthState", "Massachusetts");
dictionary.Add("placeOfBirthZip", "01730");
dictionary.Add("placeOfBirthCountry", "United States");
deathRecord.PlaceOfBirth = dictionary;
dictionary = new Dictionary <string, string>();
dictionary.Add("placeOfDeathTypeCode", "16983000");
dictionary.Add("placeOfDeathTypeSystem", "http://snomed.info/sct");
dictionary.Add("placeOfDeathTypeDisplay", "Death in hospital");
dictionary.Add("placeOfDeathFacilityName", "Example Hospital");
dictionary.Add("placeOfDeathLine1", "8 Example Street");
dictionary.Add("placeOfDeathLine2", "Line 2");
dictionary.Add("placeOfDeathCity", "Bedford");
dictionary.Add("placeOfDeathCounty", "Middlesex");
dictionary.Add("placeOfDeathState", "Massachusetts");
dictionary.Add("placeOfDeathZip", "01730");
dictionary.Add("placeOfDeathCountry", "United States");
dictionary.Add("placeOfDeathInsideCityLimits", "True");
deathRecord.PlaceOfDeath = dictionary;
code = new Dictionary <string, string>();
code.Add("code", "S");
code.Add("system", "http://hl7.org/fhir/v3/MaritalStatus");
code.Add("display", "Never Married");
deathRecord.MaritalStatus = code;
code = new Dictionary <string, string>();
code.Add("code", "PHC1453");
code.Add("system", "http://github.com/nightingaleproject/fhirDeathRecord/sdr/decedent/cs/EducationCS");
code.Add("display", "Bachelor's Degree");
deathRecord.Education = code;
deathRecord.Age = "100";
Dictionary <string, string> occupation = new Dictionary <string, string>();
occupation.Add("jobDescription", "Software Engineer");
occupation.Add("industryDescription", "Information Technology");
deathRecord.Occupation = occupation;
deathRecord.ServedInArmedForces = false;
dictionary = new Dictionary <string, string>();
dictionary.Add("dispositionTypeCode", "449971000124106");
dictionary.Add("dispositionTypeSystem", "http://snomed.info/sct");
dictionary.Add("dispositionTypeDisplay", "Burial");
dictionary.Add("dispositionPlaceName", "Example disposition place name");
dictionary.Add("dispositionPlaceLine1", "100 Example Street");
dictionary.Add("dispositionPlaceLine2", "Line 2");
dictionary.Add("dispositionPlaceCity", "Bedford");
dictionary.Add("dispositionPlaceCounty", "Middlesex");
dictionary.Add("dispositionPlaceState", "Massachusetts");
dictionary.Add("dispositionPlaceZip", "01730");
dictionary.Add("dispositionPlaceCountry", "United States");
dictionary.Add("dispositionPlaceInsideCityLimits", "True");
dictionary.Add("funeralFacilityName", "Example funeral facility name");
dictionary.Add("funeralFacilityLine1", "50 Example Street");
dictionary.Add("funeralFacilityLine2", "Line 2a");
dictionary.Add("funeralFacilityCity", "Watertown");
dictionary.Add("funeralFacilityCounty", "Middlesex");
dictionary.Add("funeralFacilityState", "Massachusetts");
dictionary.Add("funeralFacilityZip", "02472");
dictionary.Add("funeralFacilityCountry", "United States");
dictionary.Add("funeralFacilityInsideCityLimits", "False");
deathRecord.Disposition = dictionary;
deathRecord.CertifierFamilyName = "Doctor";
deathRecord.CertifierGivenNames = new string[] { "Certifier", "Middle" };
deathRecord.CertifierSuffix = "Sr.";
Dictionary <string, string> address = new Dictionary <string, string>();
address.Add("certifierAddressStreet", "123 Test Street");
address.Add("certifierAddressCity", "Boston");
address.Add("certifierAddressCounty", "Suffolk");
address.Add("certifierAddressState", "Massachusetts");
address.Add("certifierAddressZip", "12345");
deathRecord.CertifierAddress = address;
code = new Dictionary <string, string>();
code.Add("code", "434651000124107");
code.Add("display", "Physician (Pronouncer and Certifier)");
deathRecord.CertifierType = code;
code = new Dictionary <string, string>();
code.Add("code", "MD");
code.Add("system", "http://hl7.org/fhir/v2/0360/2.7");
code.Add("display", "Doctor of Medicine");
deathRecord.CertifierQualification = code;
deathRecord.ContributingConditions = "Example Contributing Condition";
Tuple <string, string, Dictionary <string, string> >[] causes =
{
Tuple.Create("Example Immediate COD", "minutes", new Dictionary <string, string>()
{
{ "code", "1234" }, { "system", "example"}
}),
Tuple.Create("Example Underlying COD 1", "2 hours", new Dictionary <string, string>()),
Tuple.Create("Example Underlying COD 2", "6 months", new Dictionary <string, string>()),
Tuple.Create("Example Underlying COD 3", "15 years", new Dictionary <string, string>())
};
deathRecord.CausesOfDeath = causes;
deathRecord.AutopsyPerformed = false;
deathRecord.AutopsyResultsAvailable = false;
code = new Dictionary <string, string>();
code.Add("code", "7878000");
code.Add("system", "http://github.com/nightingaleproject/fhirDeathRecord/sdr/causeOfDeath/vs/MannerOfDeathVS");
code.Add("display", "Accident");
deathRecord.MannerOfDeath = code;
code = new Dictionary <string, string>();
code.Add("code", "373066001");
code.Add("system", "http://github.com/nightingaleproject/fhirDeathRecord/sdr/causeOfDeath/vs/ContributoryTobaccoUseVS");
code.Add("display", "Yes");
deathRecord.TobaccoUseContributedToDeath = code;
deathRecord.ActualOrPresumedDateOfDeath = "2018-09-01T00:00:00+06:00";
deathRecord.DatePronouncedDead = "2018-09-01T00:00:00+04:00";
deathRecord.DeathFromWorkInjury = true;
code = new Dictionary <string, string>();
code.Add("code", "236320001");
code.Add("system", "http://github.com/nightingaleproject/fhirDeathRecord/sdr/causeOfDeath/vs/TransportRelationshipsVS");
code.Add("display", "Vehicle driver");
deathRecord.DeathFromTransportInjury = code;
deathRecord.MedicalExaminerContacted = true;
code = new Dictionary <string, string>();
code.Add("code", "PHC1260");
code.Add("system", "http://github.com/nightingaleproject/fhirDeathRecord/sdr/causeOfDeath/vs/PregnancyStatusVS");
code.Add("display", "Not pregnant within past year");
deathRecord.TimingOfRecentPregnancyInRelationToDeath = code;
Dictionary <string, string> detailsOfInjury = new Dictionary <string, string>();
detailsOfInjury.Add("placeOfInjuryDescription", "Home");
detailsOfInjury.Add("effectiveDateTime", "2018-04-19T15:43:00+00:00");
detailsOfInjury.Add("description", "Example details of injury");
detailsOfInjury.Add("placeOfInjuryLine1", "7 Example Street");
detailsOfInjury.Add("placeOfInjuryLine2", "Line 2");
detailsOfInjury.Add("placeOfInjuryCity", "Bedford");
detailsOfInjury.Add("placeOfInjuryCounty", "Middlesex");
detailsOfInjury.Add("placeOfInjuryState", "Massachusetts");
detailsOfInjury.Add("placeOfInjuryZip", "01730");
detailsOfInjury.Add("placeOfInjuryCountry", "United States");
detailsOfInjury.Add("placeOfInjuryInsideCityLimits", "true");
deathRecord.DetailsOfInjury = detailsOfInjury;
Console.WriteLine(XDocument.Parse(deathRecord.ToXML()).ToString() + "\n\n");
Console.WriteLine(deathRecord.ToJSON() + "\n\n");
return(0);
}
else if (args.Length == 2 && args[0] == "2ije")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
IJEMortality ije1 = new IJEMortality(d);
Console.WriteLine(ije1.ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "ije2xml")
{
IJEMortality ije1 = new IJEMortality(File.ReadAllText(args[1]));
DeathRecord d = ije1.ToDeathRecord();
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "ije2json")
{
IJEMortality ije1 = new IJEMortality(File.ReadAllText(args[1]));
DeathRecord d = ije1.ToDeathRecord();
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "json2xml")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "checkXml")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]), true);
Console.WriteLine(XDocument.Parse(d.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "checkJson")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]), true);
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "xml2json")
{
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
Console.WriteLine(d.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "xml2xml")
{
// Forces record through getters and then setters, prints as xml
DeathRecord indr = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord outdr = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
property.SetValue(outdr, property.GetValue(indr));
}
Console.WriteLine(XDocument.Parse(outdr.ToXML()).ToString());
return(0);
}
else if (args.Length == 2 && args[0] == "json2json")
{
// Forces record through getters and then setters, prints as JSON
DeathRecord indr = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord outdr = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
property.SetValue(outdr, property.GetValue(indr));
}
Console.WriteLine(outdr.ToJSON());
return(0);
}
else if (args.Length == 2 && args[0] == "roundtrip-ije")
{
Console.WriteLine("Converting FHIR to IJE...\n");
DeathRecord d = new DeathRecord(File.ReadAllText(args[1]));
//Console.WriteLine(XDocument.Parse(d.ToXML()).ToString() + "\n");
IJEMortality ije1 = new IJEMortality(d);
//Console.WriteLine(ije1.ToString() + "\n\n");
IJEMortality ije2 = new IJEMortality(ije1.ToString());
//Console.WriteLine(ije2.ToString() + "\n\n");
//Console.WriteLine(XDocument.Parse(ije2.ToDeathRecord().ToXML()).ToString() + "\n");
IJEMortality ije3 = new IJEMortality(new DeathRecord(ije2.ToDeathRecord().ToXML()));
int issues = 0;
int total = 0;
foreach (PropertyInfo property in typeof(IJEMortality).GetProperties())
{
string val1 = Convert.ToString(property.GetValue(ije1, null));
string val2 = Convert.ToString(property.GetValue(ije2, null));
string val3 = Convert.ToString(property.GetValue(ije3, null));
IJEField info = (IJEField)property.GetCustomAttributes().First();
if (val1.ToUpper() != val2.ToUpper() || val1.ToUpper() != val3.ToUpper() || val2.ToUpper() != val3.ToUpper())
{
issues++;
Console.WriteLine($"[MISMATCH]\t{info.Name}: {info.Contents} \t\t\"{val1}\" != \"{val2}\" != \"{val3}\"");
}
total++;
}
Console.WriteLine($"\n{issues} issues out of {total} total fields.");
return(0);
}
else if (args.Length == 2 && args[0] == "roundtrip-all")
{
DeathRecord d1 = new DeathRecord(File.ReadAllText(args[1]));
DeathRecord d2 = new DeathRecord(d1.ToJSON());
DeathRecord d3 = new DeathRecord();
List <PropertyInfo> properties = typeof(DeathRecord).GetProperties().ToList();
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
property.SetValue(d3, property.GetValue(d2));
}
IJEMortality ije1 = new IJEMortality(d3);
IJEMortality ije2 = new IJEMortality(ije1.ToString());
DeathRecord d4 = ije2.ToDeathRecord();
// We KNOW certain fields just aren't in the IJE, so make sure to ignore them.
string[] ignoreKeys = { "placeOfDeathFacilityName" };
int good = 0;
int bad = 0;
foreach (PropertyInfo property in properties)
{
if (property.Name.Contains("CausesOfDeath") || property.Name.Contains("CertifierQualification"))
{
continue;
}
string one;
string two;
string three;
string four;
if (property.PropertyType.ToString() == "System.Collections.Generic.Dictionary`2[System.String,System.String]")
{
Dictionary <string, string> oneDict = (Dictionary <string, string>)property.GetValue(d1);
foreach (string ignoreKey in ignoreKeys)
{
if (oneDict.ContainsKey(ignoreKey))
{
oneDict[ignoreKey] = "";
}
}
one = String.Join(", ", oneDict.Select(x => x.Key + "=" + x.Value).ToArray());
two = String.Join(", ", ((Dictionary <string, string>)property.GetValue(d2)).Select(x => x.Key + "=" + x.Value).ToArray());
three = String.Join(", ", ((Dictionary <string, string>)property.GetValue(d3)).Select(x => x.Key + "=" + x.Value).ToArray());
four = String.Join(", ", ((Dictionary <string, string>)property.GetValue(d4)).Select(x => x.Key + "=" + x.Value).ToArray());
}
else if (property.PropertyType.ToString() == "System.String[]")
{
one = String.Join(", ", (string[])property.GetValue(d1));
two = String.Join(", ", (string[])property.GetValue(d2));
three = String.Join(", ", (string[])property.GetValue(d3));
four = String.Join(", ", (string[])property.GetValue(d4));
}
else
{
one = Convert.ToString(property.GetValue(d1));
two = Convert.ToString(property.GetValue(d2));
three = Convert.ToString(property.GetValue(d3));
four = Convert.ToString(property.GetValue(d4));
}
if (one.ToLower() != four.ToLower())
{
Console.WriteLine("[MISMATCH]\t" + $"\"{one}\" (property: {property.Name}) does not equal \"{four}\"" + $" 1:\"{one}\" 2:\"{two}\" 3:\"{three}\" 4:\"{four}\"");
bad++;
//return 1;
}
else
{
Console.WriteLine("[MATCH]\t" + $"\"{one}\" (property: {property.Name}) equals \"{four}\"" + $" 1:\"{one}\" 2:\"{two}\" 3:\"{three}\" 4:\"{four}\"");
good++;
}
}
Console.WriteLine($"\n{bad} mismatches out of {good + bad} total properties checked.");
if (bad > 0)
{
return(1);
}
else
{
return(0);
}
}
else if (args.Length == 2 && args[0] == "ije")
{
string ijeString = File.ReadAllText(args[1]);
List <PropertyInfo> properties = typeof(IJEMortality).GetProperties().ToList().OrderBy(p => ((IJEField)p.GetCustomAttributes().First()).Field).ToList();
foreach (PropertyInfo property in properties)
{
IJEField info = (IJEField)property.GetCustomAttributes().First();
string field = ijeString.Substring(info.Location - 1, info.Length);
Console.WriteLine($"{info.Field, -5} {info.Name,-15} {Truncate(info.Contents, 75), -75}: \"{field + "\"",-80}");
}
}
else
{
foreach (var path in args)
{
return(ReadFile(path));
}
}
return(0);
}