public void WriteIndelOutcomesFile(ConcurrentDictionary <HashableIndel, int[]> masterOutcomesLookup)
{
using (var sw = _outputFactory.GetTextWriter(Path.Combine(_outDir, "IndelOutcomes.csv")))
{
sw.WriteLine(
"Indel,Success,Failure,Rank,NumIndels,AddedAsMulti,ConfirmedExisting,AcceptedRealignment,OtherAccepted");
foreach (var kvp in masterOutcomesLookup.OrderBy(x => x.Key.StringRepresentation + (x.Key.InMulti ? "|" + x.Key.OtherIndel : "")))
{
sw.WriteLine(kvp.Key.StringRepresentation + (kvp.Key.InMulti ? "|" + kvp.Key.OtherIndel : "") + "," + string.Join(",", kvp.Value));
}
}
}
private void WriteIndelsCsv(string outFolder, string indelsCsvName, Dictionary <string, IndelEvidence> indelStringLookup)
{
using (var writer = _dataOutputFactory.GetTextWriter(Path.Combine(outFolder, indelsCsvName)))
{
writer.WriteLine("Indel,Observations,LeftAnchor,RightAnchor,Mess,Quality,Forward,Reverse,Stitched,ReputableSupport,IsRepeat,IsSplit,Outcome");
foreach (var kvp in indelStringLookup)
{
writer.WriteLine(kvp.Key + "," + kvp.Value.ToString());
}
}
}