public override void GlobalContext()
{
base.GlobalContext();
_buildConfigurationTask = IoC.Resolve <IBuildConfigurationTask>();
_entityPathResolver = IoC.Resolve <IEntityPathResolver>();
_simulation = DomainFactoryForSpecs.CreateDefaultSimulation();
}
public override void GlobalContext()
{
base.GlobalContext();
_buildConfigurationTask = IoC.Resolve <IBuildConfigurationTask>();
_entityPathResolver = IoC.Resolve <IEntityPathResolver>();
var enzymeFactory = IoC.Resolve <IIndividualEnzymeFactory>();
var compoundProcessRepository = IoC.Resolve <ICompoundProcessRepository>();
var cloneManager = IoC.Resolve <ICloneManager>();
_compound = DomainFactoryForSpecs.CreateStandardCompound();
_individual = DomainFactoryForSpecs.CreateStandardIndividual();
_protocol = DomainFactoryForSpecs.CreateStandardIVBolusProtocol();
_enzyme = enzymeFactory.AddMoleculeTo(_individual, "CYP").DowncastTo <IndividualEnzyme>();
_metabolizationProcess = cloneManager.Clone(compoundProcessRepository
.ProcessByName(CoreConstantsForSpecs.Process.METABOLIZATION_SPECIFIC_FIRST_ORDER).DowncastTo <PartialProcess>());
_metabolizationProcess.Name = "My Partial Process";
_metabolizationProcess.Parameter(ConverterConstants.Parameters.CLspec).Value = 15;
_compound.AddProcess(_metabolizationProcess);
_simulation = DomainFactoryForSpecs.CreateModelLessSimulationWith(_individual, _compound, _protocol)
.DowncastTo <IndividualSimulation>();
_simulation.CompoundPropertiesList.First()
.Processes
.MetabolizationSelection
.AddPartialProcessSelection(new EnzymaticProcessSelection {
ProcessName = _metabolizationProcess.Name, MoleculeName = _enzyme.Name
});
DomainFactoryForSpecs.AddModelToSimulation(_simulation);
}
public override void GlobalContext()
{
base.GlobalContext();
_iv = DomainFactoryForSpecs.CreateStandardIVProtocol();
_compound = DomainFactoryForSpecs.CreateStandardCompound();
_individual = DomainFactoryForSpecs.CreateStandardIndividual(CoreConstants.Population.Preterm);
_population = DomainFactoryForSpecs.CreateDefaultPopulation(_individual);
_entityPathResolver = IoC.Resolve <IEntityPathResolver>();
_buildConfigurationTask = IoC.Resolve <IBuildConfigurationTask>();
}
public GeneratePKMLTemplatesCommand(IBuildConfigurationTask buildConfigurationTask, IPKMLPersistor pkmlPersistor, IDialogCreator dialogCreator,
IHeavyWorkManager heavyWorkManager, IMoBiExportTask moBiExportTask, ISnapshotObjectCreator snapshotObjectCreator)
{
_buildConfigurationTask = buildConfigurationTask;
_pkmlPersistor = pkmlPersistor;
_dialogCreator = dialogCreator;
_heavyWorkManager = heavyWorkManager;
_moBiExportTask = moBiExportTask;
_snapshotObjectCreator = snapshotObjectCreator;
}
public GeneratePKMLTemplatesCommand(ISimulationMapper simulationMapper, IDefaultIndividualRetriever defaultIndividualRetriever,
IBuildConfigurationTask buildConfigurationTask, IPKMLPersistor pkmlPersistor, IDialogCreator dialogCreator,
IHeavyWorkManager heavyWorkManager, IMoBiExportTask moBiExportTask)
{
_simulationMapper = simulationMapper;
_defaultIndividualRetriever = defaultIndividualRetriever;
_buildConfigurationTask = buildConfigurationTask;
_pkmlPersistor = pkmlPersistor;
_dialogCreator = dialogCreator;
_heavyWorkManager = heavyWorkManager;
_moBiExportTask = moBiExportTask;
}
public SimulationModelCreator(IBuildConfigurationTask buildConfigurationTask, IModelConstructor modelConstructor, IParameterIdUpdater parameterIdUpdater,
IEntityPathResolver entityPathResolver, IExpressionContainersRetriever expressionContainersRetriever,
ISimulationSettingsFactory simulationSettingsFactory, ISimulationPersistableUpdater simulationPersistableUpdater)
{
_buildConfigurationTask = buildConfigurationTask;
_modelConstructor = modelConstructor;
_parameterIdUpdater = parameterIdUpdater;
_entityPathResolver = entityPathResolver;
_expressionContainersRetriever = expressionContainersRetriever;
_simulationSettingsFactory = simulationSettingsFactory;
_simulationPersistableUpdater = simulationPersistableUpdater;
}
public MoBiExportTask(IBuildConfigurationTask buildConfigurationTask, ISimulationToModelCoreSimulationMapper simulationMapper,
IRepresentationInfoRepository representationInfoRepository, IPKSimConfiguration configuration,
ILazyLoadTask lazyLoadTask, IDialogCreator dialogCreator, ISimulationPersistor simulationPersistor, IProjectRetriever projectRetriever,
IObjectIdResetter objectIdResetter, IJournalRetriever journalRetriever)
{
_buildConfigurationTask = buildConfigurationTask;
_simulationMapper = simulationMapper;
_representationInfoRepository = representationInfoRepository;
_configuration = configuration;
_lazyLoadTask = lazyLoadTask;
_dialogCreator = dialogCreator;
_simulationPersistor = simulationPersistor;
_projectRetriever = projectRetriever;
_objectIdResetter = objectIdResetter;
_journalRetriever = journalRetriever;
}
protected override void Context()
{
_buildConfigurationTask = A.Fake <IBuildConfigurationTask>();
_simulationMapper = A.Fake <ISimulationToModelCoreSimulationMapper>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_configuration = A.Fake <IPKSimConfiguration>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_dialogCreator = A.Fake <IDialogCreator>();
_simulationPersistor = A.Fake <ISimulationPersistor>();
_projectRetriever = A.Fake <IProjectRetriever>();
_objectIdResetter = A.Fake <IObjectIdResetter>();
_journalRetriever = A.Fake <IJournalRetriever>();
sut = new MoBiExportTask(_buildConfigurationTask, _simulationMapper, _representationInfoRepository,
_configuration, _lazyLoadTask, _dialogCreator, _simulationPersistor, _projectRetriever, _objectIdResetter, _journalRetriever);
}
