public void MergeCalculationMethodInModel(IModel model, IBuildConfiguration buildConfiguration)
{
try
{
_buildConfiguration = buildConfiguration;
_allContainers = model.Root.GetAllContainersAndSelf <IContainer>().ToList();
_allBlackBoxParameters = model.Root.GetAllChildren <IParameter>().Where(p => p.Formula.IsBlackBox()).ToList();
_model = model;
foreach (var calculationMethod in buildConfiguration.AllCalculationMethods())
{
var allMoleculesUsingMethod = allMoleculesUsing(calculationMethod, buildConfiguration.Molecules).ToList();
createFormulaForBlackBoxParameters(calculationMethod, allMoleculesUsingMethod);
addHelpParametersFor(calculationMethod, allMoleculesUsingMethod);
}
}
finally
{
_buildConfiguration = null;
_allContainers.Clear();
_allBlackBoxParameters.Clear();
_model = null;
}
}
public void AddCalculationMethodsToBuildConfiguration(IBuildConfiguration buildConfiguration)
{
_calculationMethodRepository.All().Each(
cm => buildConfiguration.AddCalculationMethod(_cloneManager.Clone(cm, new FormulaCache())));
correctPathsInCalculationMethods(buildConfiguration.AllCalculationMethods(), firstTopContainerName(buildConfiguration));
}
public ValidationResult Validate(IBuildConfiguration buildConfiguration)
{
var validationResult = new ValidationResult();
validateBuildingBlockWithFormulaCache(buildConfiguration.Molecules, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.Reactions, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.SpatialStructure, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.PassiveTransports, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.Observers, validationResult);
validateEventGroupBuildingBlock(buildConfiguration.EventGroups, buildConfiguration.Molecules, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.MoleculeStartValues, validationResult);
validateBuildingBlockWithFormulaCache(buildConfiguration.ParameterStartValues, validationResult);
buildConfiguration.AllCalculationMethods().Each(cm => validateBuildingBlockWithFormulaCache(cm, validationResult));
return(validationResult);
}
public void should_have_set_the_used_calculation_method_in_the_build_configuration()
{
_buildConfiguration.AllCalculationMethods().ShouldOnlyContain(_cm1, _cm2);
}