public Simulation(Variables v,
IStrategyCollection strategyCollection)
{
V = v;
StrategyCollection = strategyCollection;
Wins = new Dictionary <Winner, int>
{
[Winner.Cooperator] = 0,
[Winner.Defector] = 0,
[Winner.Cooperator | Winner.Fix] = 0,
[Winner.Defector | Winner.Fix] = 0,
[Winner.Tie] = 0
};
TimeStepsCount = Enumerable
.Range(0, V.MaxTimeSteps + 1)
.ToDictionary(x => x, x => 0);
HeritabilitySummaries = new List <HeritabilitySummary> (V.Runs);
HeritabilityMean = new HeritabilitySummary( );
HeritabilitySd = new HeritabilitySummary( );
if (V.IncludeConfidenceIntervals)
{
ConfidenceIntervalStats = new ConfidenceIntervalStats(V.MaxTimeSteps, V.Runs, V.Z);
}
}
public override void CalculateHeritability( )
{
if (GenerationsPassed <= 2)
{
return;
}
var groups = History
.GroupBy(x => x.parent)
.Select(x => (parent: x.Key, offsprings: x.Select(y => y.offspring).ToList( )))
.Where(x => x.offsprings.Any( ))
.ToList( );
var covPhenoQuality = groups.Select(x => x.parent.PhenotypicQuality)
.PopulationCovariance(groups.Select(x => x.offsprings.Average(y => y.PhenotypicQuality)));
var covGeneticQuality = groups.Select(x => x.parent.GeneticQuality)
.PopulationCovariance(groups.Select(x => x.offsprings.Average(y => y.GeneticQuality)));
var varPhenoQuality = groups
.Select(x => x.parent.PhenotypicQuality)
.PopulationVariance( );
var varGeneticQuality = groups
.Select(x => x.parent.GeneticQuality)
.PopulationVariance( );
var pairs = History.Take(History.Count - V.PopulationSize);
groups = pairs
.GroupBy(x => x.parent)
.Select(x => (parent: x.Key, offsprings: x.Select(y => y.offspring).ToList( )))
.Where(x => x.offsprings.Any( ))
.ToList( );
var covReproduction = groups.Select(x => (double)x.parent.OffspringCount)
.PopulationCovariance(groups.Select(x => x.offsprings.Average(y => y.OffspringCount)));
var varReproduction = groups
.Select(x => x.parent.PhenotypicQuality)
.PopulationVariance( );
Heritability = new HeritabilitySummary
{
PhenotypicQuality = covPhenoQuality / varPhenoQuality,
VariancePhenotypicQuality = varPhenoQuality,
CovariancePhenotypicQuality = covPhenoQuality,
GeneticQuality = covGeneticQuality / varGeneticQuality,
VarianceGeneticQuality = varGeneticQuality,
CovarianceGeneticQuality = covGeneticQuality,
Reproduction = covReproduction / varReproduction,
VarianceReproduction = varReproduction,
CovarianceReproduction = covReproduction
};
if (IsLoggingEnabled)
{
Logger.Debug("\n\nHeritability Calculations: \n");
var generations = History
.GroupBy(x => x.parent)
.Select(x => (parent: x.Key,
offsprings: x.Select(y => y.offspring)
.ToList( )))
.Batch(V.PopulationSize)
.Select(x => x.ToList( ))
.ToList( );
for (var i = 0; i < generations.Count; i++)
{
var generation = generations[i];
Logger.Debug($"\n\nGen#{i + 1}\n");
foreach (var(parent, offsprings) in generation)
{
Logger.Debug($"{parent} -> {offsprings.Count} Offsprings:");
foreach (var offspring in offsprings)
{
Logger.Debug($"\t{offspring} OffspringCount: {offspring.OffspringCount}");
}
}
}
Logger.Debug($"\n{Heritability}");
}
}
