/// <summary>
/// Reads rna, peptide Fasta-Sequence(s) and generates HELMNotation
/// </summary>
/// <param name="fastaString"></param>
/// <returns></returns>
public static string FastaToHelm(string fastaString)
{
string helm = null;
string errorMsg = "Can't convert FASTA to Helm";
if (UseWebEditor)
{
throw new InvalidCastException(errorMsg); // can't do yet
}
else
{
string helm1 = HelmService.GenerateHELMFromFastaPeptide(fastaString);
if (helm1 == null)
{
throw new InvalidCastException(errorMsg);
}
string helm2 = HelmService.GenerateHELMFromFastaRNA(fastaString);
if (helm2 == null)
{
throw new InvalidCastException(errorMsg);
}
if (helm1.Length >= helm2.Length)
{
return(helm1);
}
else
{
return(helm2);
}
}
}
public static string FastaRnaToHelm(string fastaString)
{
string helm = null;
if (UseWebEditor)
{
throw new InvalidCastException("Can't convert FASTA to Helm"); // can't do yet
}
else
{
helm = HelmService.GenerateHELMFromFastaRNA(fastaString);
}
return(helm);
}