public bool LoadFile(int fileId, int datasetId)
{
var file = _fileRepository.Get(fileId);
string filePath;
DataTable dataTable;
bool success;
filePath = Path.Combine(file.Path, file.FileName);
dataTable = ReadOriginalFile(filePath);
switch (file.Format)
{
case "SDTM":
var sdtmLoader = new SDTMloader(_dataServiceUnit);
success = sdtmLoader.LoadSDTM(datasetId, fileId, dataTable);
return(success);
case "ADTM":
var hdDataloader = new HDloader(_dataServiceUnit);
success = hdDataloader.LoadHDdata(datasetId, fileId, dataTable);
return(success);
}
return(false);
}
public async Task <bool> LoadDataset(int datasetId, int fileId)
{
Dataset dataset = GetActivityDataset(datasetId);
var reload = false;
var loaded = false;
var dataFile = _dataFileRepository.Get(fileId);
if (dataFile.IsLoadedToDB)
{
reload = true;
}
try
{
switch (dataset.Template.Code)
{
case "DM":
var subjectLoader = new SubjectLoader(_dataServiceUnit);
loaded = await subjectLoader.LoadSubjects(dataset, fileId, reload);
break;
case "BS":
var sampleLoader = new BioSampleLoader(_dataServiceUnit);
loaded = await sampleLoader.LoadBioSamples(dataset, fileId, reload);
break;
case "CY":
case "HD":
var hdDataLoader = new HDloader(_dataServiceUnit);
//loaded = await hdDataLoader.LoadHDdata(dataset,fileId, datasetId);
break;
case "MX":
break;
default:
var observationLoader = new ObservationLoader(this._dataServiceUnit);
loaded = await observationLoader.LoadObservations(dataset, fileId, reload);
if (loaded)
{
await _cacheService.GenerateAndCacheClinicalDTO(dataFile.ProjectId);
}
break;
}
if (loaded)
{
dataFile.State = "LOADED";
dataFile.IsLoadedToDB = true;
_dataFileRepository.Update(dataFile);
if (!dataset.DataFiles.Select(d => d.DatafileId).Contains(fileId))
{
//Adding a new datafile to this dataset
dataset.DataFiles.Add(new DatasetDatafile()
{
DatasetId = datasetId, DatafileId = dataFile.Id
});
_datasetRepository.Update(dataset);
}
_dataServiceUnit.Save();
}
if (!loaded && dataFile.State == "SAVED")
{
_sdtmRepository.DeleteMany(s => s.DatafileId == fileId && s.DatasetId == datasetId);
}
}
catch (Exception e)
{
Debug.WriteLine("Failed to load descriptors to SQL database", e.Message);
await UnloadDataset(datasetId, fileId, "LOADING FAILED");
}
return(loaded);
}
