public void SendFKPM(FKPMGene fkp)
{
if (Genes.ContainsKey(fkp.gene))
{
Genes [fkp.gene].SendFKPM(fkp.fkpm);
}
if (Regions.ContainsKey(fkp.gene))
{
Regions [fkp.gene].SendFKPM(fkp.fkpm);
}
}
public void SendComponent(string _id, int _start, int _end, Sense sn)
{
char[] chrs = { '#' };
string[] strs = _id.Split(chrs, 3);
if (Genes.ContainsKey(strs [0]))
{
Genes [strs [0]].AddFileElement(strs [1], _start, _end);
}
else if (Regions.ContainsKey(strs [0]))
{
Regions [strs [0]].AddFileElement(strs [1], _start, _end);
}
else
{
AddRegion(strs [0], strs [1], _start, _end, sn);
}
}
/// <summary>
/// Add nodes to random connection gene in genome
/// </summary>
private void AddNode(Random rnd, ref int innovation, ref int number, List <Gene> allGenes)
{
int index = rnd.Next(0, Genes.Count);
var pair = Genes.ElementAt(index);
Gene gene = pair.Value;
gene.Type = GeneType.Disabled;
Node node = null;
Gene firstGene = null;
Gene latterGene = null;
bool exists = FindExistingNode(gene, ref node, ref firstGene, ref latterGene, allGenes, ref innovation, ref number);
if (!exists)
{
node = new Node(NodeType.Hidden, gene.In.Layer + 1, ++number);
firstGene = new Gene(gene.In, node, 1f, GeneType.Enabled, ++innovation);
latterGene = new Gene(node, gene.Out, gene.Weight, GeneType.Enabled, ++innovation);
}
// Check if the latter gene connection cannot be from the same layer to the same layer
if (gene.Out.Layer == node.Layer)
{
IncrementLayer(node);
}
if (!Genes.ContainsKey(firstGene.Innovation)) // should always go to if branch
{
Genes.Add(firstGene.Innovation, firstGene);
firstGene.In.OutgoingConnections.Add(firstGene);
if (!exists)
{
var g = firstGene.ShallowCopy();
g.Type = GeneType.AddNode;
allGenes.Add(g); // still points to nodes in this genome
}
}
else
{
;
}
if (!Genes.ContainsKey(latterGene.Innovation)) // should always go to if branch
{
Genes.Add(latterGene.Innovation, latterGene);
latterGene.In.OutgoingConnections.Add(latterGene);
if (!exists)
{
var g = latterGene.ShallowCopy();
g.Type = GeneType.AddNode;
allGenes.Add(g); // still points to nodes in this genome
}
}
else
{
;
}
if (!Nodes.Contains(node)) // should always go to if branch
{
Nodes.Add(node);
}
else
{
for (int i = 0; i < Nodes.Count; i++)
{
if (node.Number == Nodes[i].Number)
{
if (ReferenceEquals(node, Nodes[i]))
{
;
}
else
{
;
}
}
}
}
}