private void bwNewKitYDNAJob_DoWork(object sender, DoWorkEventArgs e)
{
try
{
string[] lines = File.ReadAllLines(e.Argument.ToString());
StringBuilder sb = new StringBuilder();
string[] data = null;
string[] snp = null;
foreach (string line in lines)
{
data = line.Replace("\"", "").Split(new char[] { ',' });
//"Type","Position","SNPName","Derived","OnTree","Reference","Genotype","Confidence"
if (data[0] == "Known SNP")
{
if (data[3] == "Yes(+)")
{
sb.Append(data[2] + "+, ");
}
else if (data[3] == "No(-)")
{
sb.Append(data[2] + "-, ");
}
}
else if (data[0] == "Novel Variant")
{
if (ymap.ContainsKey(data[1]))
{
snp = GGKUtilLib.getYSNP(data[1], data[6]);
if (snp[0].IndexOf(";") == -1)
{
sb.Append(snp[0] + snp[1] + ", ");
}
else
{
sb.Append(snp[0].Substring(0, snp[0].IndexOf(";")) + snp[1] + ", ");
}
}
}
}
//
ysnps = sb.ToString().Trim();
if (ysnps.Length > 0)
{
ysnps = ysnps.Substring(0, ysnps.Length - 1);
}
}
catch (Exception)
{
MessageBox.Show("Unable to get Y-SNPs from " + e.Argument.ToString());
}
}